Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 SNORD56.5-201ENST00000364281 72 ntBASIC3.09□□□□□ -1.91
CCDC39Q9UFE4 SNORD31B-201ENST00000364977 69 ntBASIC3.09□□□□□ -1.91
CCDC39Q9UFE4 RNU6-234P-201ENST00000365229 104 ntBASIC3.09□□□□□ -1.91
CCDC39Q9UFE4 Y_RNA.344-201ENST00000365381 112 ntBASIC3.09□□□□□ -1.91
CCDC39Q9UFE4 SNORD24-201ENST00000383884 75 ntBASIC3.09□□□□□ -1.91
CCDC39Q9UFE4 RNU6-813P-201ENST00000384691 107 ntBASIC3.09□□□□□ -1.91
CCDC39Q9UFE4 MIR548A2-201ENST00000384956 97 ntBASIC3.09□□□□□ -1.91
CCDC39Q9UFE4 MIR1294-201ENST00000408503 142 ntBASIC3.09□□□□□ -1.91
CCDC39Q9UFE4 Y_RNA.593-201ENST00000410292 98 ntBASIC3.09□□□□□ -1.91
CCDC39Q9UFE4 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.09□□□□□ -1.91
CCDC39Q9UFE4 Y_RNA.666-201ENST00000516187 112 ntBASIC3.09□□□□□ -1.91
CCDC39Q9UFE4 SNORA74D-201ENST00000516404 141 ntBASIC3.09□□□□□ -1.91
CCDC39Q9UFE4 RNA5SP395-201ENST00000516567 118 ntBASIC3.09□□□□□ -1.91
CCDC39Q9UFE4 MIR4765-201ENST00000585007 77 ntBASIC3.09□□□□□ -1.91
CCDC39Q9UFE4 MIR376A2-201ENST00000636782 80 ntBASIC3.09□□□□□ -1.91
CCDC39Q9UFE4 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC39Q9UFE4 RNU6-486P-201ENST00000363116 107 ntBASIC3.08□□□□□ -1.92
CCDC39Q9UFE4 Y_RNA.107-201ENST00000363190 121 ntBASIC3.08□□□□□ -1.92
CCDC39Q9UFE4 Y_RNA.466-201ENST00000384294 113 ntBASIC3.08□□□□□ -1.92
CCDC39Q9UFE4 RNU6-1235P-201ENST00000384559 107 ntBASIC3.08□□□□□ -1.92
CCDC39Q9UFE4 MIR491-201ENST00000384877 84 ntBASIC3.08□□□□□ -1.92
CCDC39Q9UFE4 MIR759-201ENST00000390224 91 ntBASIC3.08□□□□□ -1.92
CCDC39Q9UFE4 AC087499.2-201ENST00000432861 149 ntBASIC3.08□□□□□ -1.92
CCDC39Q9UFE4 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.08□□□□□ -1.92
CCDC39Q9UFE4 RNU6-893P-201ENST00000458841 100 ntBASIC3.08□□□□□ -1.92
CCDC39Q9UFE4 RNU6-498P-201ENST00000459468 107 ntBASIC3.08□□□□□ -1.92
CCDC39Q9UFE4 RNU6-693P-201ENST00000516134 107 ntBASIC3.08□□□□□ -1.92
CCDC39Q9UFE4 RNU6-65P-201ENST00000516332 98 ntBASIC3.08□□□□□ -1.92
CCDC39Q9UFE4 AC090517.3-201ENST00000625170 141 ntBASIC3.08□□□□□ -1.92
CCDC39Q9UFE4 Y_RNA.17-201ENST00000362433 111 ntBASIC3.07□□□□□ -1.92
CCDC39Q9UFE4 RNA5SP387-201ENST00000364226 106 ntBASIC3.07□□□□□ -1.92
CCDC39Q9UFE4 SNORA63D-201ENST00000364359 132 ntBASIC3.07□□□□□ -1.92
CCDC39Q9UFE4 Y_RNA.333-201ENST00000365274 102 ntBASIC3.07□□□□□ -1.92
CCDC39Q9UFE4 Z98742.2-201ENST00000431564 187 ntBASIC3.07□□□□□ -1.92
CCDC39Q9UFE4 AC074050.1-201ENST00000563247 211 ntBASIC3.07□□□□□ -1.92
CCDC39Q9UFE4 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC39Q9UFE4 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC39Q9UFE4 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC39Q9UFE4 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC39Q9UFE4 Y_RNA.265-201ENST00000364677 108 ntBASIC3.06□□□□□ -1.92
CCDC39Q9UFE4 RNU6-972P-201ENST00000391208 107 ntBASIC3.06□□□□□ -1.92
CCDC39Q9UFE4 AL138827.1-201ENST00000402666 306 ntBASIC3.06□□□□□ -1.92
CCDC39Q9UFE4 MIR1255A-201ENST00000408338 113 ntBASIC3.06□□□□□ -1.92
CCDC39Q9UFE4 AC097463.2-201ENST00000421074 142 ntBASIC3.06□□□□□ -1.92
CCDC39Q9UFE4 snoU13.22-201ENST00000459428 104 ntBASIC3.06□□□□□ -1.92
CCDC39Q9UFE4 RPS29P21-201ENST00000496272 170 ntBASIC3.06□□□□□ -1.92
CCDC39Q9UFE4 RNU6-1096P-201ENST00000517089 102 ntBASIC3.06□□□□□ -1.92
CCDC39Q9UFE4 RNA5SP402-201ENST00000517148 110 ntBASIC3.06□□□□□ -1.92
CCDC39Q9UFE4 MIR3616-201ENST00000584070 92 ntBASIC3.06□□□□□ -1.92
CCDC39Q9UFE4 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.06□□□□□ -1.92
CCDC39Q9UFE4 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC39Q9UFE4 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC39Q9UFE4 RNU6-944P-201ENST00000364023 107 ntBASIC3.05□□□□□ -1.92
CCDC39Q9UFE4 RNU6-461P-201ENST00000364195 107 ntBASIC3.05□□□□□ -1.92
CCDC39Q9UFE4 RNU6-690P-201ENST00000365242 106 ntBASIC3.05□□□□□ -1.92
CCDC39Q9UFE4 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC39Q9UFE4 AL135938.1-201ENST00000443141 297 ntBASIC3.05□□□□□ -1.92
CCDC39Q9UFE4 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC39Q9UFE4 MIR5197-201ENST00000583721 112 ntBASIC3.05□□□□□ -1.92
CCDC39Q9UFE4 AC008507.4-201ENST00000585464 127 ntBASIC3.05□□□□□ -1.92
CCDC39Q9UFE4 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC3.05□□□□□ -1.92
CCDC39Q9UFE4 MIR7157-201ENST00000635801 60 ntBASIC3.05□□□□□ -1.92
CCDC39Q9UFE4 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC39Q9UFE4 MIR128-1-201ENST00000384921 82 ntBASIC3.04□□□□□ -1.92
CCDC39Q9UFE4 MIR548D2-201ENST00000384955 97 ntBASIC3.04□□□□□ -1.92
CCDC39Q9UFE4 MIR518F-201ENST00000384973 87 ntBASIC3.04□□□□□ -1.92
CCDC39Q9UFE4 RNA5SP21-201ENST00000410917 96 ntBASIC3.04□□□□□ -1.92
CCDC39Q9UFE4 Y_RNA.621-201ENST00000411065 96 ntBASIC3.04□□□□□ -1.92
CCDC39Q9UFE4 AC092427.1-202ENST00000430569 476 ntBASIC3.04□□□□□ -1.92
CCDC39Q9UFE4 SNRPGP10-201ENST00000432323 225 ntBASIC3.04□□□□□ -1.92
CCDC39Q9UFE4 SNRPGP13-201ENST00000442212 177 ntBASIC3.04□□□□□ -1.92
CCDC39Q9UFE4 HMGN1P7-201ENST00000491722 313 ntBASIC3.04□□□□□ -1.92
CCDC39Q9UFE4 RNA5SP367-201ENST00000516557 118 ntBASIC3.04□□□□□ -1.92
CCDC39Q9UFE4 FAM71BP1-201ENST00000604431 523 ntBASIC3.04□□□□□ -1.92
CCDC39Q9UFE4 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.04□□□□□ -1.92
CCDC39Q9UFE4 AL137847.3-201ENST00000611521 109 ntBASIC3.04□□□□□ -1.92
CCDC39Q9UFE4 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC39Q9UFE4 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
CCDC39Q9UFE4 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.04□□□□□ -1.92
CCDC39Q9UFE4 AC080128.1-201ENST00000474389 1917 ntBASIC3.03□□□□□ -1.92
CCDC39Q9UFE4 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC39Q9UFE4 RNU6-349P-201ENST00000362402 107 ntBASIC3.03□□□□□ -1.92
CCDC39Q9UFE4 RNU1-112P-201ENST00000364401 164 ntBASIC3.03□□□□□ -1.92
CCDC39Q9UFE4 Y_RNA.298-201ENST00000364960 107 ntBASIC3.03□□□□□ -1.92
CCDC39Q9UFE4 SNORA48.2-201ENST00000390926 124 ntBASIC3.03□□□□□ -1.92
CCDC39Q9UFE4 RNU6-1328P-201ENST00000410938 106 ntBASIC3.03□□□□□ -1.92
CCDC39Q9UFE4 ATP6V0E1P1-201ENST00000412537 226 ntBASIC3.03□□□□□ -1.92
CCDC39Q9UFE4 AC022137.1-201ENST00000483735 151 ntBASIC3.03□□□□□ -1.92
CCDC39Q9UFE4 RNA5SP112-201ENST00000515937 99 ntBASIC3.03□□□□□ -1.92
CCDC39Q9UFE4 SCARNA3-201ENST00000517097 143 ntBASIC3.03□□□□□ -1.92
CCDC39Q9UFE4 SUMO2P16-201ENST00000519475 264 ntBASIC3.03□□□□□ -1.92
CCDC39Q9UFE4 AL161756.2-201ENST00000604597 246 ntBASIC3.03□□□□□ -1.92
CCDC39Q9UFE4 AL137790.1-201ENST00000634283 177 ntBASIC3.03□□□□□ -1.92
CCDC39Q9UFE4 MIR3202-2-201ENST00000635980 79 ntBASIC3.03□□□□□ -1.92
CCDC39Q9UFE4 AL162726.3-218ENST00000636401 95 ntBASIC3.03□□□□□ -1.92
CCDC39Q9UFE4 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
CCDC39Q9UFE4 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.03□□□□□ -1.92
CCDC39Q9UFE4 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.02□□□□□ -1.93
CCDC39Q9UFE4 Y_RNA.221-201ENST00000364248 96 ntBASIC3.02□□□□□ -1.93
CCDC39Q9UFE4 Y_RNA.253-201ENST00000364562 112 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 161.8 ms