Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 MIR8054-201ENST00000620877 86 ntBASIC1.54□□□□□ -2.16
SIX2Q9NPC8 Y_RNA.269-201ENST00000364685 89 ntBASIC1.53□□□□□ -2.16
SIX2Q9NPC8 MIR676-201ENST00000390702 67 ntBASIC1.53□□□□□ -2.16
SIX2Q9NPC8 SNORA67.6-201ENST00000391093 99 ntBASIC1.53□□□□□ -2.16
SIX2Q9NPC8 SNORA17.3-201ENST00000391159 129 ntBASIC1.53□□□□□ -2.16
SIX2Q9NPC8 SNORA36B-201ENST00000410438 131 ntBASIC1.53□□□□□ -2.16
SIX2Q9NPC8 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.53□□□□□ -2.16
SIX2Q9NPC8 AC233266.1-201ENST00000454518 96 ntBASIC1.53□□□□□ -2.16
SIX2Q9NPC8 RPL23AP54-201ENST00000495129 419 ntBASIC1.53□□□□□ -2.16
SIX2Q9NPC8 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.53□□□□□ -2.16
SIX2Q9NPC8 Y_RNA.679-201ENST00000516416 91 ntBASIC1.53□□□□□ -2.16
SIX2Q9NPC8 RNA5SP481-201ENST00000516814 122 ntBASIC1.53□□□□□ -2.16
SIX2Q9NPC8 RNU6-111P-201ENST00000517179 105 ntBASIC1.53□□□□□ -2.16
SIX2Q9NPC8 SNORA31.24-201ENST00000517232 57 ntBASIC1.53□□□□□ -2.16
SIX2Q9NPC8 AC022254.1-201ENST00000567857 235 ntBASIC1.53□□□□□ -2.16
SIX2Q9NPC8 SNORD53B-201ENST00000577887 78 ntBASIC1.53□□□□□ -2.16
SIX2Q9NPC8 MIR4299-201ENST00000577899 72 ntBASIC1.53□□□□□ -2.16
SIX2Q9NPC8 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.53□□□□□ -2.16
SIX2Q9NPC8 AL096840.1-201ENST00000603287 93 ntBASIC1.53□□□□□ -2.16
SIX2Q9NPC8 AC242852.1-201ENST00000612151 96 ntBASIC1.53□□□□□ -2.16
SIX2Q9NPC8 AC073349.3-201ENST00000617616 186 ntBASIC1.53□□□□□ -2.16
SIX2Q9NPC8 AC244015.1-201ENST00000622301 99 ntBASIC1.53□□□□□ -2.16
SIX2Q9NPC8 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
SIX2Q9NPC8 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.53□□□□□ -2.17
SIX2Q9NPC8 U8.1-201ENST00000362843 134 ntBASIC1.52□□□□□ -2.17
SIX2Q9NPC8 Y_RNA.65-201ENST00000362846 100 ntBASIC1.52□□□□□ -2.17
SIX2Q9NPC8 RNU1-17P-201ENST00000363022 152 ntBASIC1.52□□□□□ -2.17
SIX2Q9NPC8 RNU6-338P-201ENST00000383888 105 ntBASIC1.52□□□□□ -2.17
SIX2Q9NPC8 RNU6-144P-201ENST00000383951 107 ntBASIC1.52□□□□□ -2.17
SIX2Q9NPC8 RNU6-1080P-201ENST00000383982 107 ntBASIC1.52□□□□□ -2.17
SIX2Q9NPC8 Y_RNA.476-201ENST00000384347 108 ntBASIC1.52□□□□□ -2.17
SIX2Q9NPC8 RNU6-440P-201ENST00000390882 105 ntBASIC1.52□□□□□ -2.17
SIX2Q9NPC8 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.52□□□□□ -2.17
SIX2Q9NPC8 Y_RNA.638-201ENST00000459374 113 ntBASIC1.52□□□□□ -2.17
SIX2Q9NPC8 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.52□□□□□ -2.17
SIX2Q9NPC8 SNORD116-28-201ENST00000516123 91 ntBASIC1.52□□□□□ -2.17
SIX2Q9NPC8 RNU2-56P-201ENST00000516826 190 ntBASIC1.52□□□□□ -2.17
SIX2Q9NPC8 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.52□□□□□ -2.17
SIX2Q9NPC8 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.52□□□□□ -2.17
SIX2Q9NPC8 AL929325.1-201ENST00000603096 117 ntBASIC1.52□□□□□ -2.17
SIX2Q9NPC8 AC011921.3-201ENST00000605540 361 ntBASIC1.52□□□□□ -2.17
SIX2Q9NPC8 AL442067.1-201ENST00000613261 223 ntBASIC1.52□□□□□ -2.17
SIX2Q9NPC8 AP000648.3-201ENST00000623539 4507 ntBASIC1.52□□□□□ -2.17
SIX2Q9NPC8 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
SIX2Q9NPC8 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
SIX2Q9NPC8 RNU6-1205P-201ENST00000363625 106 ntBASIC1.51□□□□□ -2.17
SIX2Q9NPC8 RNU6-950P-201ENST00000384651 107 ntBASIC1.51□□□□□ -2.17
SIX2Q9NPC8 SNORA12.1-201ENST00000390873 148 ntBASIC1.51□□□□□ -2.17
SIX2Q9NPC8 RN7SKP51-201ENST00000410781 304 ntBASIC1.51□□□□□ -2.17
SIX2Q9NPC8 Y_RNA.621-201ENST00000411065 96 ntBASIC1.51□□□□□ -2.17
SIX2Q9NPC8 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.51□□□□□ -2.17
SIX2Q9NPC8 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.51□□□□□ -2.17
SIX2Q9NPC8 snoU13.27-201ENST00000459278 104 ntBASIC1.51□□□□□ -2.17
SIX2Q9NPC8 RNU6-437P-201ENST00000459408 95 ntBASIC1.51□□□□□ -2.17
SIX2Q9NPC8 AL049830.1-201ENST00000468034 425 ntBASIC1.51□□□□□ -2.17
SIX2Q9NPC8 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.51□□□□□ -2.17
SIX2Q9NPC8 RNU4-71P-201ENST00000516258 113 ntBASIC1.51□□□□□ -2.17
SIX2Q9NPC8 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.51□□□□□ -2.17
SIX2Q9NPC8 RNU6-674P-201ENST00000363831 107 ntBASIC1.5□□□□□ -2.17
SIX2Q9NPC8 RNU6-457P-201ENST00000363999 107 ntBASIC1.5□□□□□ -2.17
SIX2Q9NPC8 RNY1-201ENST00000364228 113 ntBASIC1.5□□□□□ -2.17
SIX2Q9NPC8 Y_RNA.292-201ENST00000364904 97 ntBASIC1.5□□□□□ -2.17
SIX2Q9NPC8 Y_RNA.304-201ENST00000365011 112 ntBASIC1.5□□□□□ -2.17
SIX2Q9NPC8 SNORA67.5-201ENST00000391036 107 ntBASIC1.5□□□□□ -2.17
SIX2Q9NPC8 RN7SKP200-201ENST00000410564 320 ntBASIC1.5□□□□□ -2.17
SIX2Q9NPC8 AL591806.2-201ENST00000433122 173 ntBASIC1.5□□□□□ -2.17
SIX2Q9NPC8 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.5□□□□□ -2.17
SIX2Q9NPC8 RPL23AP6-201ENST00000446637 472 ntBASIC1.5□□□□□ -2.17
SIX2Q9NPC8 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.5□□□□□ -2.17
SIX2Q9NPC8 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.5□□□□□ -2.17
SIX2Q9NPC8 AC100767.1-201ENST00000528178 123 ntBASIC1.5□□□□□ -2.17
SIX2Q9NPC8 AC068338.1-201ENST00000565567 176 ntBASIC1.5□□□□□ -2.17
SIX2Q9NPC8 MIR4713-201ENST00000582691 75 ntBASIC1.5□□□□□ -2.17
SIX2Q9NPC8 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
SIX2Q9NPC8 Y_RNA.203-201ENST00000364106 102 ntBASIC1.49□□□□□ -2.17
SIX2Q9NPC8 Y_RNA.253-201ENST00000364562 112 ntBASIC1.49□□□□□ -2.17
SIX2Q9NPC8 Y_RNA.293-201ENST00000364908 93 ntBASIC1.49□□□□□ -2.17
SIX2Q9NPC8 RNY4P28-201ENST00000365281 93 ntBASIC1.49□□□□□ -2.17
SIX2Q9NPC8 RNU6-1031P-201ENST00000384773 107 ntBASIC1.49□□□□□ -2.17
SIX2Q9NPC8 RNU6-360P-201ENST00000390944 104 ntBASIC1.49□□□□□ -2.17
SIX2Q9NPC8 COX6CP10-201ENST00000416832 224 ntBASIC1.49□□□□□ -2.17
SIX2Q9NPC8 RPL31P63-201ENST00000422565 375 ntBASIC1.49□□□□□ -2.17
SIX2Q9NPC8 STAG3L5P-204ENST00000443759 179 ntBASIC1.49□□□□□ -2.17
SIX2Q9NPC8 RNU7-34P-201ENST00000459394 64 ntBASIC1.49□□□□□ -2.17
SIX2Q9NPC8 RNU7-28P-201ENST00000516759 62 ntBASIC1.49□□□□□ -2.17
SIX2Q9NPC8 RNU6-388P-201ENST00000517012 105 ntBASIC1.49□□□□□ -2.17
SIX2Q9NPC8 RNU6-389P-201ENST00000517048 105 ntBASIC1.49□□□□□ -2.17
SIX2Q9NPC8 MIR4709-201ENST00000577272 72 ntBASIC1.49□□□□□ -2.17
SIX2Q9NPC8 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.49□□□□□ -2.17
SIX2Q9NPC8 AL627230.6-201ENST00000611129 280 ntBASIC1.49□□□□□ -2.17
SIX2Q9NPC8 AC078938.1-201ENST00000620993 318 ntBASIC1.49□□□□□ -2.17
SIX2Q9NPC8 AC131280.1-202ENST00000624067 4211 ntBASIC1.49□□□□□ -2.17
SIX2Q9NPC8 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.49□□□□□ -2.17
SIX2Q9NPC8 RNU4-41P-201ENST00000364426 143 ntBASIC1.48□□□□□ -2.17
SIX2Q9NPC8 Y_RNA.265-201ENST00000364677 108 ntBASIC1.48□□□□□ -2.17
SIX2Q9NPC8 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
SIX2Q9NPC8 RNA5SP482-201ENST00000391269 118 ntBASIC1.48□□□□□ -2.17
SIX2Q9NPC8 RNU6ATAC23P-201ENST00000408448 123 ntBASIC1.48□□□□□ -2.17
SIX2Q9NPC8 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.48□□□□□ -2.17
SIX2Q9NPC8 Z98949.2-201ENST00000440996 144 ntBASIC1.48□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 176.1 ms