Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 HMGN2P32-201ENST00000444648 269 ntBASIC0.73□□□□□ -2.29
CCDC43Q96MW1 MTCO3P10-201ENST00000455912 772 ntBASIC0.73□□□□□ -2.29
CCDC43Q96MW1 MTND4LP26-201ENST00000518144 282 ntBASIC0.73□□□□□ -2.29
CCDC43Q96MW1 AC036111.3-201ENST00000526389 112 ntBASIC0.73□□□□□ -2.29
CCDC43Q96MW1 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC0.73□□□□□ -2.29
CCDC43Q96MW1 AC025627.3-201ENST00000582078 182 ntBASIC0.73□□□□□ -2.29
CCDC43Q96MW1 AC022441.3-201ENST00000605737 136 ntBASIC0.73□□□□□ -2.29
CCDC43Q96MW1 RNU6-94P-201ENST00000607728 107 ntBASIC0.73□□□□□ -2.29
CCDC43Q96MW1 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC0.73□□□□□ -2.29
CCDC43Q96MW1 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.73□□□□□ -2.29
CCDC43Q96MW1 Y_RNA.230-201ENST00000364348 109 ntBASIC0.72□□□□□ -2.29
CCDC43Q96MW1 RNU6-855P-201ENST00000410395 104 ntBASIC0.72□□□□□ -2.29
CCDC43Q96MW1 AC096644.2-201ENST00000429278 159 ntBASIC0.72□□□□□ -2.29
CCDC43Q96MW1 COX6CP6-201ENST00000490840 228 ntBASIC0.72□□□□□ -2.29
CCDC43Q96MW1 AC004812.1-201ENST00000540773 146 ntBASIC0.72□□□□□ -2.29
CCDC43Q96MW1 SNORA4-201ENST00000584302 138 ntBASIC0.72□□□□□ -2.29
CCDC43Q96MW1 AC134026.1-201ENST00000623249 2239 ntBASIC0.71□□□□□ -2.3
CCDC43Q96MW1 Y_RNA.148-201ENST00000363557 117 ntBASIC0.71□□□□□ -2.3
CCDC43Q96MW1 MIR628-201ENST00000385229 95 ntBASIC0.71□□□□□ -2.3
CCDC43Q96MW1 MCFD2P1-201ENST00000417812 300 ntBASIC0.71□□□□□ -2.3
CCDC43Q96MW1 MTND1P2-201ENST00000430604 821 ntBASIC0.71□□□□□ -2.3
CCDC43Q96MW1 AC138305.3-201ENST00000624988 240 ntBASIC0.71□□□□□ -2.3
CCDC43Q96MW1 SNORD111-201ENST00000408139 94 ntBASIC0.7□□□□□ -2.3
CCDC43Q96MW1 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.7□□□□□ -2.3
CCDC43Q96MW1 Y_RNA.653-201ENST00000459091 95 ntBASIC0.7□□□□□ -2.3
CCDC43Q96MW1 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.7□□□□□ -2.3
CCDC43Q96MW1 RNU6-1110P-201ENST00000516462 101 ntBASIC0.7□□□□□ -2.3
CCDC43Q96MW1 RNU11-2P-201ENST00000516898 142 ntBASIC0.7□□□□□ -2.3
CCDC43Q96MW1 RN7SKP295-201ENST00000517264 153 ntBASIC0.7□□□□□ -2.3
CCDC43Q96MW1 AC093027.1-201ENST00000546698 429 ntBASIC0.7□□□□□ -2.3
CCDC43Q96MW1 MIR548AR-201ENST00000582191 57 ntBASIC0.7□□□□□ -2.3
CCDC43Q96MW1 RMST_2.1-201ENST00000617263 136 ntBASIC0.7□□□□□ -2.3
CCDC43Q96MW1 AC022306.2-201ENST00000617563 647 ntBASIC0.7□□□□□ -2.3
CCDC43Q96MW1 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.7□□□□□ -2.3
CCDC43Q96MW1 U6.92-201ENST00000636464 89 ntBASIC0.7□□□□□ -2.3
CCDC43Q96MW1 RNU6-1175P-201ENST00000365200 107 ntBASIC0.69□□□□□ -2.3
CCDC43Q96MW1 RNU6-1323P-201ENST00000384025 107 ntBASIC0.69□□□□□ -2.3
CCDC43Q96MW1 RNU6-710P-201ENST00000410424 105 ntBASIC0.69□□□□□ -2.3
CCDC43Q96MW1 MTCO2P27-201ENST00000420740 428 ntBASIC0.69□□□□□ -2.3
CCDC43Q96MW1 AC067940.1-201ENST00000458411 300 ntBASIC0.69□□□□□ -2.3
CCDC43Q96MW1 RNU6-559P-201ENST00000516151 98 ntBASIC0.69□□□□□ -2.3
CCDC43Q96MW1 POLR3GP1-201ENST00000594073 261 ntBASIC0.69□□□□□ -2.3
CCDC43Q96MW1 RBM11P1-201ENST00000604951 799 ntBASIC0.69□□□□□ -2.3
CCDC43Q96MW1 MIR4251-201ENST00000635819 61 ntBASIC0.69□□□□□ -2.3
CCDC43Q96MW1 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
CCDC43Q96MW1 SNORD14E-201ENST00000364009 85 ntBASIC0.68□□□□□ -2.3
CCDC43Q96MW1 RNU6-654P-201ENST00000364373 107 ntBASIC0.68□□□□□ -2.3
CCDC43Q96MW1 Y_RNA.341-201ENST00000365341 102 ntBASIC0.68□□□□□ -2.3
CCDC43Q96MW1 Y_RNA.474-201ENST00000384341 102 ntBASIC0.68□□□□□ -2.3
CCDC43Q96MW1 SNORD28B-201ENST00000390993 75 ntBASIC0.68□□□□□ -2.3
CCDC43Q96MW1 MIR1302-7-201ENST00000408841 72 ntBASIC0.68□□□□□ -2.3
CCDC43Q96MW1 RNU6-994P-201ENST00000410507 111 ntBASIC0.68□□□□□ -2.3
CCDC43Q96MW1 AL392103.1-201ENST00000447000 198 ntBASIC0.68□□□□□ -2.3
CCDC43Q96MW1 RNU6-911P-201ENST00000516523 104 ntBASIC0.68□□□□□ -2.3
CCDC43Q96MW1 AC008133.2-201ENST00000624540 351 ntBASIC0.68□□□□□ -2.3
CCDC43Q96MW1 MIR6516-201ENST00000630554 81 ntBASIC0.68□□□□□ -2.3
CCDC43Q96MW1 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
CCDC43Q96MW1 Y_RNA.27-201ENST00000362540 103 ntBASIC0.67□□□□□ -2.3
CCDC43Q96MW1 RNU6-490P-201ENST00000362985 107 ntBASIC0.67□□□□□ -2.3
CCDC43Q96MW1 SNORD113.3-201ENST00000364630 78 ntBASIC0.67□□□□□ -2.3
CCDC43Q96MW1 Y_RNA.310-201ENST00000365063 113 ntBASIC0.67□□□□□ -2.3
CCDC43Q96MW1 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.67□□□□□ -2.3
CCDC43Q96MW1 snoU13.18-201ENST00000459483 104 ntBASIC0.67□□□□□ -2.3
CCDC43Q96MW1 AC098869.1-201ENST00000481627 292 ntBASIC0.67□□□□□ -2.3
CCDC43Q96MW1 Y_RNA.673-201ENST00000516306 88 ntBASIC0.67□□□□□ -2.3
CCDC43Q96MW1 AC004817.2-201ENST00000561794 651 ntBASIC0.67□□□□□ -2.3
CCDC43Q96MW1 AC113139.1-201ENST00000605049 239 ntBASIC0.67□□□□□ -2.3
CCDC43Q96MW1 Y_RNA.203-201ENST00000364106 102 ntBASIC0.66□□□□□ -2.3
CCDC43Q96MW1 Y_RNA.248-201ENST00000364501 109 ntBASIC0.66□□□□□ -2.3
CCDC43Q96MW1 Y_RNA.508-201ENST00000384502 114 ntBASIC0.66□□□□□ -2.3
CCDC43Q96MW1 Y_RNA.570-201ENST00000384750 101 ntBASIC0.66□□□□□ -2.3
CCDC43Q96MW1 MIR559-201ENST00000385188 96 ntBASIC0.66□□□□□ -2.3
CCDC43Q96MW1 RNU6ATAC25P-201ENST00000408798 117 ntBASIC0.66□□□□□ -2.3
CCDC43Q96MW1 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.66□□□□□ -2.3
CCDC43Q96MW1 AC099799.1-201ENST00000439809 192 ntBASIC0.66□□□□□ -2.3
CCDC43Q96MW1 AC005042.3-201ENST00000453230 174 ntBASIC0.66□□□□□ -2.3
CCDC43Q96MW1 RNU7-116P-201ENST00000516940 62 ntBASIC0.66□□□□□ -2.3
CCDC43Q96MW1 RNU6-699P-201ENST00000517081 110 ntBASIC0.66□□□□□ -2.3
CCDC43Q96MW1 AL136317.1-201ENST00000612653 226 ntBASIC0.66□□□□□ -2.3
CCDC43Q96MW1 U6atac.1-201ENST00000616025 117 ntBASIC0.66□□□□□ -2.3
CCDC43Q96MW1 AC139792.2-201ENST00000624218 587 ntBASIC0.66□□□□□ -2.3
CCDC43Q96MW1 RNA5SP347-201ENST00000362445 119 ntBASIC0.65□□□□□ -2.31
CCDC43Q96MW1 SNORD38C-201ENST00000384381 69 ntBASIC0.65□□□□□ -2.31
CCDC43Q96MW1 MIR92A1-201ENST00000385233 78 ntBASIC0.65□□□□□ -2.31
CCDC43Q96MW1 AL590004.1-201ENST00000405321 300 ntBASIC0.65□□□□□ -2.31
CCDC43Q96MW1 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.65□□□□□ -2.31
CCDC43Q96MW1 RNA5SP95-201ENST00000410319 137 ntBASIC0.65□□□□□ -2.31
CCDC43Q96MW1 AP003484.1-201ENST00000530974 250 ntBASIC0.65□□□□□ -2.31
CCDC43Q96MW1 AC005730.3-201ENST00000583067 366 ntBASIC0.65□□□□□ -2.31
CCDC43Q96MW1 AC012433.1-201ENST00000588916 398 ntBASIC0.65□□□□□ -2.31
CCDC43Q96MW1 AC133104.2-201ENST00000615272 193 ntBASIC0.65□□□□□ -2.31
CCDC43Q96MW1 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.65□□□□□ -2.31
CCDC43Q96MW1 AL442644.1-201ENST00000454390 3105 ntBASIC0.64□□□□□ -2.31
CCDC43Q96MW1 Y_RNA.796-201ENST00000364268 102 ntBASIC0.64□□□□□ -2.31
CCDC43Q96MW1 Y_RNA.799-201ENST00000364992 102 ntBASIC0.64□□□□□ -2.31
CCDC43Q96MW1 SNORA2B-201ENST00000384583 137 ntBASIC0.64□□□□□ -2.31
CCDC43Q96MW1 MIR570-201ENST00000384917 97 ntBASIC0.64□□□□□ -2.31
CCDC43Q96MW1 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.64□□□□□ -2.31
CCDC43Q96MW1 AC091951.2-201ENST00000500762 203 ntBASIC0.64□□□□□ -2.31
CCDC43Q96MW1 RNU4-54P-201ENST00000516428 129 ntBASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 297.1 ms