Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.02□□□□□ -2.09
PTCHD3Q3KNS1 Y_RNA.229-201ENST00000364347 113 ntBASIC2.02□□□□□ -2.09
PTCHD3Q3KNS1 RNU4-41P-201ENST00000364426 143 ntBASIC2.02□□□□□ -2.09
PTCHD3Q3KNS1 RNA5SP37-201ENST00000365420 130 ntBASIC2.02□□□□□ -2.09
PTCHD3Q3KNS1 RNU4-70P-201ENST00000384579 139 ntBASIC2.02□□□□□ -2.09
PTCHD3Q3KNS1 RNU6-440P-201ENST00000390882 105 ntBASIC2.02□□□□□ -2.09
PTCHD3Q3KNS1 RNA5SP100-201ENST00000410903 110 ntBASIC2.02□□□□□ -2.09
PTCHD3Q3KNS1 RNA5SP59-201ENST00000410922 110 ntBASIC2.02□□□□□ -2.09
PTCHD3Q3KNS1 Y_RNA.621-201ENST00000411065 96 ntBASIC2.02□□□□□ -2.09
PTCHD3Q3KNS1 AC023449.1-201ENST00000454464 154 ntBASIC2.02□□□□□ -2.09
PTCHD3Q3KNS1 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.02□□□□□ -2.09
PTCHD3Q3KNS1 HMGN1P7-201ENST00000491722 313 ntBASIC2.02□□□□□ -2.09
PTCHD3Q3KNS1 AC107393.1-201ENST00000512403 346 ntBASIC2.02□□□□□ -2.09
PTCHD3Q3KNS1 RNU6-1007P-201ENST00000516586 107 ntBASIC2.02□□□□□ -2.09
PTCHD3Q3KNS1 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.02□□□□□ -2.09
PTCHD3Q3KNS1 MIR4448-201ENST00000584360 86 ntBASIC2.02□□□□□ -2.09
PTCHD3Q3KNS1 SNORA28-201ENST00000606769 126 ntBASIC2.02□□□□□ -2.09
PTCHD3Q3KNS1 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.02□□□□□ -2.09
PTCHD3Q3KNS1 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.02□□□□□ -2.09
PTCHD3Q3KNS1 U6.106-201ENST00000636360 105 ntBASIC2.02□□□□□ -2.09
PTCHD3Q3KNS1 MIR219B-201ENST00000637023 88 ntBASIC2.02□□□□□ -2.09
PTCHD3Q3KNS1 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
PTCHD3Q3KNS1 RNU6-1209P-201ENST00000363655 107 ntBASIC2.01□□□□□ -2.09
PTCHD3Q3KNS1 RNA5SP160-201ENST00000364866 120 ntBASIC2.01□□□□□ -2.09
PTCHD3Q3KNS1 Y_RNA.555-201ENST00000384673 110 ntBASIC2.01□□□□□ -2.09
PTCHD3Q3KNS1 RN7SKP200-201ENST00000410564 320 ntBASIC2.01□□□□□ -2.09
PTCHD3Q3KNS1 AL158823.1-201ENST00000418441 478 ntBASIC2.01□□□□□ -2.09
PTCHD3Q3KNS1 AL021397.1-201ENST00000451806 248 ntBASIC2.01□□□□□ -2.09
PTCHD3Q3KNS1 RNU6-717P-201ENST00000459076 104 ntBASIC2.01□□□□□ -2.09
PTCHD3Q3KNS1 AC025033.1-201ENST00000463883 194 ntBASIC2.01□□□□□ -2.09
PTCHD3Q3KNS1 RPS27P21-201ENST00000486977 252 ntBASIC2.01□□□□□ -2.09
PTCHD3Q3KNS1 SCARNA8-201ENST00000515924 131 ntBASIC2.01□□□□□ -2.09
PTCHD3Q3KNS1 Y_RNA.714-201ENST00000517065 90 ntBASIC2.01□□□□□ -2.09
PTCHD3Q3KNS1 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
PTCHD3Q3KNS1 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2□□□□□ -2.09
PTCHD3Q3KNS1 Y_RNA.75-201ENST00000362927 97 ntBASIC2□□□□□ -2.09
PTCHD3Q3KNS1 Y_RNA.253-201ENST00000364562 112 ntBASIC2□□□□□ -2.09
PTCHD3Q3KNS1 RNA5SP138-201ENST00000365098 114 ntBASIC2□□□□□ -2.09
PTCHD3Q3KNS1 Y_RNA.572-201ENST00000384757 98 ntBASIC2□□□□□ -2.09
PTCHD3Q3KNS1 RNU2-7P-201ENST00000410794 178 ntBASIC2□□□□□ -2.09
PTCHD3Q3KNS1 RNU2-55P-201ENST00000411146 174 ntBASIC2□□□□□ -2.09
PTCHD3Q3KNS1 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2□□□□□ -2.09
PTCHD3Q3KNS1 AC090255.1-201ENST00000495779 349 ntBASIC2□□□□□ -2.09
PTCHD3Q3KNS1 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2□□□□□ -2.09
PTCHD3Q3KNS1 RPL23AP91-201ENST00000569211 455 ntBASIC2□□□□□ -2.09
PTCHD3Q3KNS1 MIR4762-201ENST00000585261 75 ntBASIC2□□□□□ -2.09
PTCHD3Q3KNS1 AC087685.1-201ENST00000587507 141 ntBASIC2□□□□□ -2.09
PTCHD3Q3KNS1 JPX_2.1-201ENST00000614161 69 ntBASIC2□□□□□ -2.09
PTCHD3Q3KNS1 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2□□□□□ -2.09
PTCHD3Q3KNS1 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2□□□□□ -2.09
PTCHD3Q3KNS1 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2□□□□□ -2.09
PTCHD3Q3KNS1 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2□□□□□ -2.09
PTCHD3Q3KNS1 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
PTCHD3Q3KNS1 ZNF702P-202ENST00000434269 1966 ntBASIC1.99□□□□□ -2.09
PTCHD3Q3KNS1 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.99□□□□□ -2.09
PTCHD3Q3KNS1 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
PTCHD3Q3KNS1 RNA5SP432-201ENST00000362480 116 ntBASIC1.99□□□□□ -2.09
PTCHD3Q3KNS1 Y_RNA.240-201ENST00000364469 95 ntBASIC1.99□□□□□ -2.09
PTCHD3Q3KNS1 Y_RNA.242-201ENST00000364473 110 ntBASIC1.99□□□□□ -2.09
PTCHD3Q3KNS1 U8.5-201ENST00000364528 136 ntBASIC1.99□□□□□ -2.09
PTCHD3Q3KNS1 RNU6-312P-201ENST00000364629 107 ntBASIC1.99□□□□□ -2.09
PTCHD3Q3KNS1 Y_RNA.265-201ENST00000364677 108 ntBASIC1.99□□□□□ -2.09
PTCHD3Q3KNS1 RNU6-360P-201ENST00000390944 104 ntBASIC1.99□□□□□ -2.09
PTCHD3Q3KNS1 RNU2-2P-201ENST00000410396 191 ntBASIC1.99□□□□□ -2.09
PTCHD3Q3KNS1 AC009310.1-201ENST00000414414 451 ntBASIC1.99□□□□□ -2.09
PTCHD3Q3KNS1 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
PTCHD3Q3KNS1 SNORD11-201ENST00000459124 84 ntBASIC1.99□□□□□ -2.09
PTCHD3Q3KNS1 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.99□□□□□ -2.09
PTCHD3Q3KNS1 SNORA31.10-201ENST00000516482 106 ntBASIC1.99□□□□□ -2.09
PTCHD3Q3KNS1 RNU1-40P-201ENST00000516816 164 ntBASIC1.99□□□□□ -2.09
PTCHD3Q3KNS1 RNU1-97P-201ENST00000516872 164 ntBASIC1.99□□□□□ -2.09
PTCHD3Q3KNS1 MRPS18CP4-201ENST00000535821 231 ntBASIC1.99□□□□□ -2.09
PTCHD3Q3KNS1 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.99□□□□□ -2.09
PTCHD3Q3KNS1 RNU2-4P-201ENST00000606190 192 ntBASIC1.99□□□□□ -2.09
PTCHD3Q3KNS1 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.99□□□□□ -2.09
PTCHD3Q3KNS1 AL591926.4-201ENST00000616895 298 ntBASIC1.99□□□□□ -2.09
PTCHD3Q3KNS1 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
PTCHD3Q3KNS1 RNU6-682P-201ENST00000363843 106 ntBASIC1.98□□□□□ -2.09
PTCHD3Q3KNS1 RNU4-52P-201ENST00000384209 138 ntBASIC1.98□□□□□ -2.09
PTCHD3Q3KNS1 MIR17-201ENST00000385012 84 ntBASIC1.98□□□□□ -2.09
PTCHD3Q3KNS1 MIR764-201ENST00000390811 85 ntBASIC1.98□□□□□ -2.09
PTCHD3Q3KNS1 RNU6-578P-201ENST00000390980 103 ntBASIC1.98□□□□□ -2.09
PTCHD3Q3KNS1 AL034345.1-201ENST00000407768 123 ntBASIC1.98□□□□□ -2.09
PTCHD3Q3KNS1 MIR548I3-201ENST00000408378 149 ntBASIC1.98□□□□□ -2.09
PTCHD3Q3KNS1 MIR548I1-201ENST00000408810 149 ntBASIC1.98□□□□□ -2.09
PTCHD3Q3KNS1 FTH1P12-201ENST00000432137 551 ntBASIC1.98□□□□□ -2.09
PTCHD3Q3KNS1 SNRPGP10-201ENST00000432323 225 ntBASIC1.98□□□□□ -2.09
PTCHD3Q3KNS1 RPL23AP63-201ENST00000498752 471 ntBASIC1.98□□□□□ -2.09
PTCHD3Q3KNS1 MIR514B-201ENST00000516774 80 ntBASIC1.98□□□□□ -2.09
PTCHD3Q3KNS1 RNU6-453P-201ENST00000516819 85 ntBASIC1.98□□□□□ -2.09
PTCHD3Q3KNS1 RNA5SP437-201ENST00000517249 129 ntBASIC1.98□□□□□ -2.09
PTCHD3Q3KNS1 MIR4524B-201ENST00000581569 115 ntBASIC1.98□□□□□ -2.09
PTCHD3Q3KNS1 AC002984.1-201ENST00000591692 448 ntBASIC1.98□□□□□ -2.09
PTCHD3Q3KNS1 Y_RNA.783-201ENST00000613546 102 ntBASIC1.98□□□□□ -2.09
PTCHD3Q3KNS1 uc_338.4-201ENST00000616635 176 ntBASIC1.98□□□□□ -2.09
PTCHD3Q3KNS1 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.98□□□□□ -2.09
PTCHD3Q3KNS1 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
PTCHD3Q3KNS1 MIR126-201ENST00000362291 85 ntBASIC1.97□□□□□ -2.09
PTCHD3Q3KNS1 Y_RNA.180-201ENST00000363867 113 ntBASIC1.97□□□□□ -2.09
PTCHD3Q3KNS1 SNORA16B-201ENST00000364674 135 ntBASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 196.5 ms