Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC136932.1-201ENST00000574771 208 ntBASIC1.09□□□□□ -2.23
PTPN4P29074 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.09□□□□□ -2.23
PTPN4P29074 DEFB117-201ENST00000602356 141 ntBASIC1.09□□□□□ -2.23
PTPN4P29074 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.09□□□□□ -2.23
PTPN4P29074 RNU6-797P-201ENST00000363101 109 ntBASIC1.08□□□□□ -2.24
PTPN4P29074 Y_RNA.128-201ENST00000363391 112 ntBASIC1.08□□□□□ -2.24
PTPN4P29074 SNORA22-201ENST00000383907 134 ntBASIC1.08□□□□□ -2.24
PTPN4P29074 RNU6-42P-201ENST00000384165 107 ntBASIC1.08□□□□□ -2.24
PTPN4P29074 SNORA22C-201ENST00000384614 134 ntBASIC1.08□□□□□ -2.24
PTPN4P29074 MIR489-201ENST00000384923 84 ntBASIC1.08□□□□□ -2.24
PTPN4P29074 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.08□□□□□ -2.24
PTPN4P29074 RNU6-855P-201ENST00000410395 104 ntBASIC1.08□□□□□ -2.24
PTPN4P29074 Y_RNA.621-201ENST00000411065 96 ntBASIC1.08□□□□□ -2.24
PTPN4P29074 AC093850.1-201ENST00000454121 251 ntBASIC1.08□□□□□ -2.24
PTPN4P29074 RNU7-12P-201ENST00000516030 62 ntBASIC1.08□□□□□ -2.24
PTPN4P29074 AC022616.4-201ENST00000522985 181 ntBASIC1.08□□□□□ -2.24
PTPN4P29074 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.08□□□□□ -2.24
PTPN4P29074 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.08□□□□□ -2.24
PTPN4P29074 AC104695.3-201ENST00000604052 296 ntBASIC1.08□□□□□ -2.24
PTPN4P29074 AC124312.5-201ENST00000604451 268 ntBASIC1.08□□□□□ -2.24
PTPN4P29074 AC005972.2-201ENST00000604690 348 ntBASIC1.08□□□□□ -2.24
PTPN4P29074 AL022345.2-201ENST00000606307 135 ntBASIC1.08□□□□□ -2.24
PTPN4P29074 AL591926.4-201ENST00000616895 298 ntBASIC1.08□□□□□ -2.24
PTPN4P29074 SNORD114-27-201ENST00000363766 70 ntBASIC1.07□□□□□ -2.24
PTPN4P29074 Y_RNA.310-201ENST00000365063 113 ntBASIC1.07□□□□□ -2.24
PTPN4P29074 Y_RNA.341-201ENST00000365341 102 ntBASIC1.07□□□□□ -2.24
PTPN4P29074 Y_RNA.368-201ENST00000365547 113 ntBASIC1.07□□□□□ -2.24
PTPN4P29074 SNORA63.7-201ENST00000365579 123 ntBASIC1.07□□□□□ -2.24
PTPN4P29074 RNU6-21P-201ENST00000384710 107 ntBASIC1.07□□□□□ -2.24
PTPN4P29074 RNU6-823P-201ENST00000391042 103 ntBASIC1.07□□□□□ -2.24
PTPN4P29074 AL590004.1-201ENST00000405321 300 ntBASIC1.07□□□□□ -2.24
PTPN4P29074 RNU6-917P-201ENST00000516294 104 ntBASIC1.07□□□□□ -2.24
PTPN4P29074 RNU6-1046P-201ENST00000516538 107 ntBASIC1.07□□□□□ -2.24
PTPN4P29074 Y_RNA.715-201ENST00000517082 110 ntBASIC1.07□□□□□ -2.24
PTPN4P29074 RNU6-1116P-201ENST00000517269 99 ntBASIC1.07□□□□□ -2.24
PTPN4P29074 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.07□□□□□ -2.24
PTPN4P29074 HSPE1P19-201ENST00000603327 295 ntBASIC1.07□□□□□ -2.24
PTPN4P29074 AC134503.1-201ENST00000633048 54 ntBASIC1.07□□□□□ -2.24
PTPN4P29074 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
PTPN4P29074 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.07□□□□□ -2.24
PTPN4P29074 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.07□□□□□ -2.24
PTPN4P29074 U8.5-201ENST00000364528 136 ntBASIC1.06□□□□□ -2.24
PTPN4P29074 RNU6-450P-201ENST00000364654 107 ntBASIC1.06□□□□□ -2.24
PTPN4P29074 Y_RNA.286-201ENST00000364813 102 ntBASIC1.06□□□□□ -2.24
PTPN4P29074 SNORA72-201ENST00000384339 132 ntBASIC1.06□□□□□ -2.24
PTPN4P29074 RNU6-1105P-201ENST00000384774 107 ntBASIC1.06□□□□□ -2.24
PTPN4P29074 OR2A41P-201ENST00000473586 105 ntBASIC1.06□□□□□ -2.24
PTPN4P29074 HMGN1P10-201ENST00000474557 553 ntBASIC1.06□□□□□ -2.24
PTPN4P29074 RNU6-922P-201ENST00000516753 99 ntBASIC1.06□□□□□ -2.24
PTPN4P29074 Y_RNA.711-201ENST00000516993 102 ntBASIC1.06□□□□□ -2.24
PTPN4P29074 RNU6-165P-201ENST00000517170 99 ntBASIC1.06□□□□□ -2.24
PTPN4P29074 RNU6-988P-201ENST00000519081 107 ntBASIC1.06□□□□□ -2.24
PTPN4P29074 MIR3145-201ENST00000580727 82 ntBASIC1.06□□□□□ -2.24
PTPN4P29074 MIR4762-201ENST00000585261 75 ntBASIC1.06□□□□□ -2.24
PTPN4P29074 RAC1P9-201ENST00000604990 392 ntBASIC1.06□□□□□ -2.24
PTPN4P29074 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.06□□□□□ -2.24
PTPN4P29074 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.06□□□□□ -2.24
PTPN4P29074 AC068647.2-201ENST00000637380 353 ntBASIC1.06□□□□□ -2.24
PTPN4P29074 SNORD68-201ENST00000363214 84 ntBASIC1.05□□□□□ -2.24
PTPN4P29074 RNU6-833P-201ENST00000363486 107 ntBASIC1.05□□□□□ -2.24
PTPN4P29074 RNU1-124P-201ENST00000363861 145 ntBASIC1.05□□□□□ -2.24
PTPN4P29074 Y_RNA.383-201ENST00000383855 97 ntBASIC1.05□□□□□ -2.24
PTPN4P29074 SNORA22B-201ENST00000383876 138 ntBASIC1.05□□□□□ -2.24
PTPN4P29074 RNU6-1323P-201ENST00000384025 107 ntBASIC1.05□□□□□ -2.24
PTPN4P29074 Y_RNA.456-201ENST00000384232 111 ntBASIC1.05□□□□□ -2.24
PTPN4P29074 SNORD41-201ENST00000386967 70 ntBASIC1.05□□□□□ -2.24
PTPN4P29074 SNORD12-201ENST00000391002 90 ntBASIC1.05□□□□□ -2.24
PTPN4P29074 MIR548P-201ENST00000408336 84 ntBASIC1.05□□□□□ -2.24
PTPN4P29074 RNU6-1054P-201ENST00000411293 104 ntBASIC1.05□□□□□ -2.24
PTPN4P29074 AC024067.1-201ENST00000426199 223 ntBASIC1.05□□□□□ -2.24
PTPN4P29074 MTCO2P12-201ENST00000427426 682 ntBASIC1.05□□□□□ -2.24
PTPN4P29074 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.05□□□□□ -2.24
PTPN4P29074 DYNLT3P2-201ENST00000442517 295 ntBASIC1.05□□□□□ -2.24
PTPN4P29074 CYCTP-201ENST00000504253 315 ntBASIC1.05□□□□□ -2.24
PTPN4P29074 RNU6-397P-201ENST00000516226 104 ntBASIC1.05□□□□□ -2.24
PTPN4P29074 SNORA70.22-201ENST00000517160 124 ntBASIC1.05□□□□□ -2.24
PTPN4P29074 MIR4300-201ENST00000581016 96 ntBASIC1.05□□□□□ -2.24
PTPN4P29074 AC120024.3-201ENST00000603167 156 ntBASIC1.05□□□□□ -2.24
PTPN4P29074 SNORD113-5-201ENST00000607261 78 ntBASIC1.05□□□□□ -2.24
PTPN4P29074 MIR6734-201ENST00000621166 68 ntBASIC1.05□□□□□ -2.24
PTPN4P29074 AC027335.2-201ENST00000624030 375 ntBASIC1.05□□□□□ -2.24
PTPN4P29074 AC027279.3-201ENST00000625055 122 ntBASIC1.05□□□□□ -2.24
PTPN4P29074 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
PTPN4P29074 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.04□□□□□ -2.24
PTPN4P29074 Y_RNA.183-201ENST00000363882 113 ntBASIC1.04□□□□□ -2.24
PTPN4P29074 Y_RNA.253-201ENST00000364562 112 ntBASIC1.04□□□□□ -2.24
PTPN4P29074 Y_RNA.389-201ENST00000383924 113 ntBASIC1.04□□□□□ -2.24
PTPN4P29074 MIR520E-201ENST00000384867 87 ntBASIC1.04□□□□□ -2.24
PTPN4P29074 MIR891A-201ENST00000401237 79 ntBASIC1.04□□□□□ -2.24
PTPN4P29074 MIR1252-201ENST00000408861 65 ntBASIC1.04□□□□□ -2.24
PTPN4P29074 RNU6-101P-201ENST00000410323 104 ntBASIC1.04□□□□□ -2.24
PTPN4P29074 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.04□□□□□ -2.24
PTPN4P29074 UBL5P1-201ENST00000507979 193 ntBASIC1.04□□□□□ -2.24
PTPN4P29074 SEPT14P8-201ENST00000508026 178 ntBASIC1.04□□□□□ -2.24
PTPN4P29074 SNORD116-28-201ENST00000516123 91 ntBASIC1.04□□□□□ -2.24
PTPN4P29074 RNU6-897P-201ENST00000517135 105 ntBASIC1.04□□□□□ -2.24
PTPN4P29074 Y_RNA.721-201ENST00000517207 102 ntBASIC1.04□□□□□ -2.24
PTPN4P29074 MIR3171-201ENST00000584270 74 ntBASIC1.04□□□□□ -2.24
PTPN4P29074 FAM106DP-201ENST00000586416 501 ntBASIC1.04□□□□□ -2.24
PTPN4P29074 MIR376A1-201ENST00000616574 68 ntBASIC1.04□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 169.2 ms