Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 Y_RNA.673-201ENST00000516306 88 ntBASIC1.57□□□□□ -2.16
MSH3P20585 AP002004.2-201ENST00000531656 154 ntBASIC1.57□□□□□ -2.16
MSH3P20585 AC127455.1-201ENST00000565496 145 ntBASIC1.57□□□□□ -2.16
MSH3P20585 SNORD53B-201ENST00000577887 78 ntBASIC1.57□□□□□ -2.16
MSH3P20585 MIR4524B-201ENST00000581569 115 ntBASIC1.57□□□□□ -2.16
MSH3P20585 MIR4282-201ENST00000583613 67 ntBASIC1.57□□□□□ -2.16
MSH3P20585 AP000942.4-201ENST00000604811 241 ntBASIC1.57□□□□□ -2.16
MSH3P20585 BX284668.6-201ENST00000606899 438 ntBASIC1.57□□□□□ -2.16
MSH3P20585 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.57□□□□□ -2.16
MSH3P20585 AC242852.1-201ENST00000612151 96 ntBASIC1.57□□□□□ -2.16
MSH3P20585 AC013791.1-201ENST00000616619 62 ntBASIC1.57□□□□□ -2.16
MSH3P20585 AC244015.1-201ENST00000622301 99 ntBASIC1.57□□□□□ -2.16
MSH3P20585 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.56□□□□□ -2.16
MSH3P20585 Y_RNA.54-201ENST00000362766 105 ntBASIC1.56□□□□□ -2.16
MSH3P20585 RNU6-211P-201ENST00000384047 107 ntBASIC1.56□□□□□ -2.16
MSH3P20585 Y_RNA.539-201ENST00000384635 107 ntBASIC1.56□□□□□ -2.16
MSH3P20585 RNU6-360P-201ENST00000390944 104 ntBASIC1.56□□□□□ -2.16
MSH3P20585 MIR934-201ENST00000401241 83 ntBASIC1.56□□□□□ -2.16
MSH3P20585 SNORA36B-201ENST00000410438 131 ntBASIC1.56□□□□□ -2.16
MSH3P20585 BTF3P11-201ENST00000426582 477 ntBASIC1.56□□□□□ -2.16
MSH3P20585 RNU6-1023P-201ENST00000516137 106 ntBASIC1.56□□□□□ -2.16
MSH3P20585 RNU6-970P-201ENST00000516312 107 ntBASIC1.56□□□□□ -2.16
MSH3P20585 MIR5692C2-201ENST00000577959 77 ntBASIC1.56□□□□□ -2.16
MSH3P20585 MIR4285-201ENST00000581001 85 ntBASIC1.56□□□□□ -2.16
MSH3P20585 BX248123.2-201ENST00000606318 124 ntBASIC1.56□□□□□ -2.16
MSH3P20585 SNORD27-201ENST00000363981 72 ntBASIC1.55□□□□□ -2.16
MSH3P20585 RNU6-1080P-201ENST00000383982 107 ntBASIC1.55□□□□□ -2.16
MSH3P20585 RNU6-439P-201ENST00000384188 106 ntBASIC1.55□□□□□ -2.16
MSH3P20585 RNU6-950P-201ENST00000384651 107 ntBASIC1.55□□□□□ -2.16
MSH3P20585 SNORA12.1-201ENST00000390873 148 ntBASIC1.55□□□□□ -2.16
MSH3P20585 Y_RNA.590-201ENST00000410140 107 ntBASIC1.55□□□□□ -2.16
MSH3P20585 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.55□□□□□ -2.16
MSH3P20585 snoU13.27-201ENST00000459278 104 ntBASIC1.55□□□□□ -2.16
MSH3P20585 AL049830.1-201ENST00000468034 425 ntBASIC1.55□□□□□ -2.16
MSH3P20585 RPL23AP54-201ENST00000495129 419 ntBASIC1.55□□□□□ -2.16
MSH3P20585 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.55□□□□□ -2.16
MSH3P20585 MIR3198-2-201ENST00000577868 80 ntBASIC1.55□□□□□ -2.16
MSH3P20585 AC005357.1-201ENST00000588399 301 ntBASIC1.55□□□□□ -2.16
MSH3P20585 AL929325.1-201ENST00000603096 117 ntBASIC1.55□□□□□ -2.16
MSH3P20585 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.55□□□□□ -2.16
MSH3P20585 AL353997.5-201ENST00000618886 171 ntBASIC1.55□□□□□ -2.16
MSH3P20585 AP000648.3-201ENST00000623539 4507 ntBASIC1.55□□□□□ -2.16
MSH3P20585 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
MSH3P20585 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
MSH3P20585 RNU6-661P-201ENST00000362409 107 ntBASIC1.54□□□□□ -2.16
MSH3P20585 Y_RNA.60-201ENST00000362831 98 ntBASIC1.54□□□□□ -2.16
MSH3P20585 Y_RNA.76-201ENST00000362931 109 ntBASIC1.54□□□□□ -2.16
MSH3P20585 Y_RNA.188-201ENST00000363952 111 ntBASIC1.54□□□□□ -2.16
MSH3P20585 RNU6-144P-201ENST00000383951 107 ntBASIC1.54□□□□□ -2.16
MSH3P20585 RNU6-1031P-201ENST00000384773 107 ntBASIC1.54□□□□□ -2.16
MSH3P20585 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.54□□□□□ -2.16
MSH3P20585 RN7SKP200-201ENST00000410564 320 ntBASIC1.54□□□□□ -2.16
MSH3P20585 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.54□□□□□ -2.16
MSH3P20585 RNU7-28P-201ENST00000516759 62 ntBASIC1.54□□□□□ -2.16
MSH3P20585 RNU2-56P-201ENST00000516826 190 ntBASIC1.54□□□□□ -2.16
MSH3P20585 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.54□□□□□ -2.16
MSH3P20585 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.54□□□□□ -2.16
MSH3P20585 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.54□□□□□ -2.16
MSH3P20585 RNU6-1205P-201ENST00000363625 106 ntBASIC1.53□□□□□ -2.16
MSH3P20585 RNU6-674P-201ENST00000363831 107 ntBASIC1.53□□□□□ -2.16
MSH3P20585 SNORA20.1-201ENST00000364790 130 ntBASIC1.53□□□□□ -2.16
MSH3P20585 MIR517C-201ENST00000385103 95 ntBASIC1.53□□□□□ -2.16
MSH3P20585 SNORA67.5-201ENST00000391036 107 ntBASIC1.53□□□□□ -2.16
MSH3P20585 RNA5SP482-201ENST00000391269 118 ntBASIC1.53□□□□□ -2.16
MSH3P20585 Y_RNA.621-201ENST00000411065 96 ntBASIC1.53□□□□□ -2.16
MSH3P20585 COX6CP10-201ENST00000416832 224 ntBASIC1.53□□□□□ -2.16
MSH3P20585 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.53□□□□□ -2.16
MSH3P20585 AC023790.1-201ENST00000482174 347 ntBASIC1.53□□□□□ -2.16
MSH3P20585 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.53□□□□□ -2.16
MSH3P20585 Y_RNA.679-201ENST00000516416 91 ntBASIC1.53□□□□□ -2.16
MSH3P20585 SNORA44.1-201ENST00000517031 108 ntBASIC1.53□□□□□ -2.16
MSH3P20585 RNU6-1271P-201ENST00000517049 105 ntBASIC1.53□□□□□ -2.16
MSH3P20585 MIR4709-201ENST00000577272 72 ntBASIC1.53□□□□□ -2.16
MSH3P20585 AC006006.1-201ENST00000603082 144 ntBASIC1.53□□□□□ -2.16
MSH3P20585 AC011921.3-201ENST00000605540 361 ntBASIC1.53□□□□□ -2.16
MSH3P20585 AC073349.3-201ENST00000617616 186 ntBASIC1.53□□□□□ -2.16
MSH3P20585 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.53□□□□□ -2.16
MSH3P20585 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.52□□□□□ -2.17
MSH3P20585 MIR424-201ENST00000362227 98 ntBASIC1.52□□□□□ -2.17
MSH3P20585 RNU4-41P-201ENST00000364426 143 ntBASIC1.52□□□□□ -2.17
MSH3P20585 Y_RNA.265-201ENST00000364677 108 ntBASIC1.52□□□□□ -2.17
MSH3P20585 Y_RNA.489-201ENST00000384410 101 ntBASIC1.52□□□□□ -2.17
MSH3P20585 MIR30A-201ENST00000385092 71 ntBASIC1.52□□□□□ -2.17
MSH3P20585 SNORA67.6-201ENST00000391093 99 ntBASIC1.52□□□□□ -2.17
MSH3P20585 Z98949.2-201ENST00000440996 144 ntBASIC1.52□□□□□ -2.17
MSH3P20585 STAG3L5P-204ENST00000443759 179 ntBASIC1.52□□□□□ -2.17
MSH3P20585 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.52□□□□□ -2.17
MSH3P20585 Y_RNA.638-201ENST00000459374 113 ntBASIC1.52□□□□□ -2.17
MSH3P20585 RNU6-437P-201ENST00000459408 95 ntBASIC1.52□□□□□ -2.17
MSH3P20585 OR9P1P-201ENST00000496431 281 ntBASIC1.52□□□□□ -2.17
MSH3P20585 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC1.52□□□□□ -2.17
MSH3P20585 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.52□□□□□ -2.17
MSH3P20585 SNORD116-28-201ENST00000516123 91 ntBASIC1.52□□□□□ -2.17
MSH3P20585 RNU6-111P-201ENST00000517179 105 ntBASIC1.52□□□□□ -2.17
MSH3P20585 SNORA28-201ENST00000606769 126 ntBASIC1.52□□□□□ -2.17
MSH3P20585 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.52□□□□□ -2.17
MSH3P20585 RNA5SP99-201ENST00000364020 114 ntBASIC1.51□□□□□ -2.17
MSH3P20585 Y_RNA.203-201ENST00000364106 102 ntBASIC1.51□□□□□ -2.17
MSH3P20585 Y_RNA.269-201ENST00000364685 89 ntBASIC1.51□□□□□ -2.17
MSH3P20585 Y_RNA.304-201ENST00000365011 112 ntBASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 183.8 ms