Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC134026.1-201ENST00000623249 2239 ntBASIC1.4□□□□□ -2.18
HOXD4P09016 AC018630.2-201ENST00000534866 2403 ntBASIC1.4□□□□□ -2.18
HOXD4P09016 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
HOXD4P09016 UBE2WP1-201ENST00000362030 340 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 RNU6-1272P-201ENST00000362776 107 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 Y_RNA.117-201ENST00000363294 101 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 SNORA63D-201ENST00000364359 132 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 RNU6-740P-201ENST00000364734 105 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 Y_RNA.350-201ENST00000365409 98 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 Y_RNA.352-201ENST00000365439 102 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 SNORA72.4-201ENST00000384174 132 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 Y_RNA.477-201ENST00000384352 108 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 RNU6-763P-201ENST00000390865 106 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.4□□□□□ -2.19
HOXD4P09016 AC104332.1-201ENST00000440471 797 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 RPS4XP11-201ENST00000446897 772 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 RPL39P38-201ENST00000467018 153 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 RPL36AP21-201ENST00000490372 323 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 RNU6-1096P-201ENST00000517089 102 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 SNORA31.24-201ENST00000517232 57 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 AC068647.2-201ENST00000637380 353 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.4□□□□□ -2.19
HOXD4P09016 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
HOXD4P09016 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
HOXD4P09016 Y_RNA.54-201ENST00000362766 105 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 SNORA7.1-201ENST00000363750 139 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 RNU4-13P-201ENST00000364019 141 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 SNORA4.2-201ENST00000365313 147 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 Y_RNA.447-201ENST00000384184 113 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 RNU6-1289P-201ENST00000384431 106 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 MIR520A-201ENST00000384862 85 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 MIR548H3-201ENST00000408771 118 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 RNU6-651P-201ENST00000411040 105 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 U8.19-201ENST00000459095 133 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 Y_RNA.637-201ENST00000459424 114 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 RNU6-1291P-201ENST00000516591 104 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 SNORA31.17-201ENST00000516953 127 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 MIR4643-201ENST00000577473 78 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 MIR3128-201ENST00000581957 66 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 AC005972.2-201ENST00000604690 348 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 AL008718.3-201ENST00000610217 321 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 MIR7974-201ENST00000615835 79 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.39□□□□□ -2.19
HOXD4P09016 ZNF209P-201ENST00000593450 2304 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 AC068700.1-201ENST00000565862 3754 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 Y_RNA.60-201ENST00000362831 98 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 Y_RNA.122-201ENST00000363331 96 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 SNORD27-201ENST00000363981 72 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 Y_RNA.267-201ENST00000364679 109 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 Y_RNA.277-201ENST00000364754 102 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 U8.7-201ENST00000364940 136 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 Y_RNA.416-201ENST00000384014 113 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 MIR520G-201ENST00000385064 90 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 MTCO2P33-201ENST00000402100 465 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 BTF3P11-201ENST00000426582 477 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 AC245047.3-201ENST00000429428 127 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 HSPE1P9-201ENST00000440046 311 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 AC069257.2-201ENST00000441819 155 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 AC245517.4-201ENST00000448601 281 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 RNU7-141P-201ENST00000459304 62 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 RNU7-94P-201ENST00000459576 63 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 AC117454.1-201ENST00000491120 168 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.38□□□□□ -2.19
HOXD4P09016 RNU7-115P-201ENST00000516433 55 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 AC024405.2-202ENST00000532731 184 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 AP000942.4-201ENST00000604811 241 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 MIR8074-201ENST00000615081 81 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 AL078604.3-201ENST00000615580 211 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 MIR548AY-201ENST00000617669 107 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 snoU18.1-201ENST00000629629 71 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.37□□□□□ -2.19
HOXD4P09016 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
HOXD4P09016 Y_RNA.401-201ENST00000383965 117 ntBASIC1.37□□□□□ -2.19
HOXD4P09016 RNU6-1323P-201ENST00000384025 107 ntBASIC1.37□□□□□ -2.19
HOXD4P09016 Y_RNA.539-201ENST00000384635 107 ntBASIC1.37□□□□□ -2.19
HOXD4P09016 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.37□□□□□ -2.19
HOXD4P09016 MIR1276-201ENST00000408707 83 ntBASIC1.37□□□□□ -2.19
HOXD4P09016 RNU2-7P-201ENST00000410794 178 ntBASIC1.37□□□□□ -2.19
HOXD4P09016 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.37□□□□□ -2.19
HOXD4P09016 SNORA31.10-201ENST00000516482 106 ntBASIC1.37□□□□□ -2.19
HOXD4P09016 RNU6-341P-201ENST00000516973 96 ntBASIC1.37□□□□□ -2.19
HOXD4P09016 AL162424.1-201ENST00000602325 221 ntBASIC1.37□□□□□ -2.19
HOXD4P09016 MIR6504-201ENST00000613520 61 ntBASIC1.37□□□□□ -2.19
HOXD4P09016 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.37□□□□□ -2.19
HOXD4P09016 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.36□□□□□ -2.19
HOXD4P09016 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
HOXD4P09016 MIR424-201ENST00000362227 98 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 SNORA1B-201ENST00000362535 133 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 RNU6-338P-201ENST00000383888 105 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 RNU6-1080P-201ENST00000383982 107 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 RNU6-211P-201ENST00000384047 107 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
HOXD4P09016 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
HOXD4P09016 RNU11-5P-201ENST00000391216 129 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 AC233266.1-201ENST00000454518 96 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 RNA5SP445-201ENST00000515889 115 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 AC100821.1-201ENST00000523153 2479 ntBASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 172.1 ms