Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 RNU6-864P-201ENST00000516256 108 ntBASIC0.09□□□□□ -2.4
RHBDD3Q9Y3P4 RNU6-977P-201ENST00000516411 103 ntBASIC0.09□□□□□ -2.4
RHBDD3Q9Y3P4 MIR2355-201ENST00000517199 87 ntBASIC0.09□□□□□ -2.4
RHBDD3Q9Y3P4 RNU2-12P-201ENST00000517216 168 ntBASIC0.09□□□□□ -2.4
RHBDD3Q9Y3P4 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.09□□□□□ -2.4
RHBDD3Q9Y3P4 AC022523.2-201ENST00000561045 150 ntBASIC0.09□□□□□ -2.4
RHBDD3Q9Y3P4 MIR3612-201ENST00000579753 87 ntBASIC0.09□□□□□ -2.4
RHBDD3Q9Y3P4 MIR4514-201ENST00000581410 57 ntBASIC0.09□□□□□ -2.4
RHBDD3Q9Y3P4 MIR3611-201ENST00000584484 83 ntBASIC0.09□□□□□ -2.4
RHBDD3Q9Y3P4 AC087685.1-201ENST00000587507 141 ntBASIC0.09□□□□□ -2.4
RHBDD3Q9Y3P4 AC006380.1-201ENST00000603598 186 ntBASIC0.09□□□□□ -2.4
RHBDD3Q9Y3P4 RBM11P1-201ENST00000604951 799 ntBASIC0.09□□□□□ -2.4
RHBDD3Q9Y3P4 RN7SKP299-201ENST00000606679 301 ntBASIC0.09□□□□□ -2.4
RHBDD3Q9Y3P4 MIR1321-201ENST00000637766 79 ntBASIC0.09□□□□□ -2.4
RHBDD3Q9Y3P4 RNU6-369P-201ENST00000362515 102 ntBASIC0.08□□□□□ -2.4
RHBDD3Q9Y3P4 RNY1P16-201ENST00000363063 111 ntBASIC0.08□□□□□ -2.4
RHBDD3Q9Y3P4 SNORD44.1-201ENST00000363202 61 ntBASIC0.08□□□□□ -2.4
RHBDD3Q9Y3P4 SNORD50B-201ENST00000364995 70 ntBASIC0.08□□□□□ -2.4
RHBDD3Q9Y3P4 RNU6-842P-201ENST00000384269 107 ntBASIC0.08□□□□□ -2.4
RHBDD3Q9Y3P4 Y_RNA.476-201ENST00000384347 108 ntBASIC0.08□□□□□ -2.4
RHBDD3Q9Y3P4 MIR518A1-201ENST00000385068 85 ntBASIC0.08□□□□□ -2.4
RHBDD3Q9Y3P4 RNU2-66P-201ENST00000410650 161 ntBASIC0.08□□□□□ -2.4
RHBDD3Q9Y3P4 SNORA40.8-201ENST00000411034 126 ntBASIC0.08□□□□□ -2.4
RHBDD3Q9Y3P4 RNA5SP480-201ENST00000516840 109 ntBASIC0.08□□□□□ -2.4
RHBDD3Q9Y3P4 MIR4431-201ENST00000579990 94 ntBASIC0.08□□□□□ -2.4
RHBDD3Q9Y3P4 MIR548AR-201ENST00000582191 57 ntBASIC0.08□□□□□ -2.4
RHBDD3Q9Y3P4 AC005730.3-201ENST00000583067 366 ntBASIC0.08□□□□□ -2.4
RHBDD3Q9Y3P4 AP000753.3-201ENST00000604083 169 ntBASIC0.08□□□□□ -2.4
RHBDD3Q9Y3P4 AC240442.1-201ENST00000616055 283 ntBASIC0.08□□□□□ -2.4
RHBDD3Q9Y3P4 SNORD14E-201ENST00000364009 85 ntBASIC0.07□□□□□ -2.4
RHBDD3Q9Y3P4 Y_RNA.368-201ENST00000365547 113 ntBASIC0.07□□□□□ -2.4
RHBDD3Q9Y3P4 SNORA72-201ENST00000384339 132 ntBASIC0.07□□□□□ -2.4
RHBDD3Q9Y3P4 MTND2P22-201ENST00000444325 1033 ntBASIC0.07□□□□□ -2.4
RHBDD3Q9Y3P4 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.07□□□□□ -2.4
RHBDD3Q9Y3P4 MTND1P17-201ENST00000448961 204 ntBASIC0.07□□□□□ -2.4
RHBDD3Q9Y3P4 SNRPGP12-201ENST00000449481 213 ntBASIC0.07□□□□□ -2.4
RHBDD3Q9Y3P4 RNU6-830P-201ENST00000516353 107 ntBASIC0.07□□□□□ -2.4
RHBDD3Q9Y3P4 MIR3942-201ENST00000585264 109 ntBASIC0.07□□□□□ -2.4
RHBDD3Q9Y3P4 AC245008.1-201ENST00000608123 476 ntBASIC0.07□□□□□ -2.4
RHBDD3Q9Y3P4 uc_338.16-201ENST00000621804 95 ntBASIC0.07□□□□□ -2.4
RHBDD3Q9Y3P4 MIR4315-1-201ENST00000636800 73 ntBASIC0.07□□□□□ -2.4
RHBDD3Q9Y3P4 MIR3662-201ENST00000637030 95 ntBASIC0.07□□□□□ -2.4
RHBDD3Q9Y3P4 MIR4315-2-201ENST00000640925 73 ntBASIC0.07□□□□□ -2.4
RHBDD3Q9Y3P4 RNA5SP62-201ENST00000363457 110 ntBASIC0.06□□□□□ -2.4
RHBDD3Q9Y3P4 RNU6-1059P-201ENST00000363752 98 ntBASIC0.06□□□□□ -2.4
RHBDD3Q9Y3P4 Y_RNA.537-201ENST00000384626 109 ntBASIC0.06□□□□□ -2.4
RHBDD3Q9Y3P4 SNORD83.1-201ENST00000411362 77 ntBASIC0.06□□□□□ -2.4
RHBDD3Q9Y3P4 AC009161.1-201ENST00000417306 376 ntBASIC0.06□□□□□ -2.4
RHBDD3Q9Y3P4 AL139396.1-201ENST00000421137 167 ntBASIC0.06□□□□□ -2.4
RHBDD3Q9Y3P4 AC015818.7-201ENST00000428754 109 ntBASIC0.06□□□□□ -2.4
RHBDD3Q9Y3P4 SNRPGP10-201ENST00000432323 225 ntBASIC0.06□□□□□ -2.4
RHBDD3Q9Y3P4 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC0.06□□□□□ -2.4
RHBDD3Q9Y3P4 AC087499.7-201ENST00000441958 109 ntBASIC0.06□□□□□ -2.4
RHBDD3Q9Y3P4 snoU13.21-201ENST00000459368 105 ntBASIC0.06□□□□□ -2.4
RHBDD3Q9Y3P4 RNU6-329P-201ENST00000459618 107 ntBASIC0.06□□□□□ -2.4
RHBDD3Q9Y3P4 SNORA25.10-201ENST00000515926 124 ntBASIC0.06□□□□□ -2.4
RHBDD3Q9Y3P4 SNORA25.12-201ENST00000516202 82 ntBASIC0.06□□□□□ -2.4
RHBDD3Q9Y3P4 Y_RNA.670-201ENST00000516255 105 ntBASIC0.06□□□□□ -2.4
RHBDD3Q9Y3P4 AC023932.2-201ENST00000603176 175 ntBASIC0.06□□□□□ -2.4
RHBDD3Q9Y3P4 AC005972.2-201ENST00000604690 348 ntBASIC0.06□□□□□ -2.4
RHBDD3Q9Y3P4 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC0.06□□□□□ -2.4
RHBDD3Q9Y3P4 MIR330-201ENST00000362196 94 ntBASIC0.05□□□□□ -2.4
RHBDD3Q9Y3P4 Y_RNA.148-201ENST00000363557 117 ntBASIC0.05□□□□□ -2.4
RHBDD3Q9Y3P4 RNU4-67P-201ENST00000364569 141 ntBASIC0.05□□□□□ -2.4
RHBDD3Q9Y3P4 RNU6-934P-201ENST00000365154 107 ntBASIC0.05□□□□□ -2.4
RHBDD3Q9Y3P4 RNU6-318P-201ENST00000384283 103 ntBASIC0.05□□□□□ -2.4
RHBDD3Q9Y3P4 RNU2-54P-201ENST00000410299 190 ntBASIC0.05□□□□□ -2.4
RHBDD3Q9Y3P4 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.05□□□□□ -2.4
RHBDD3Q9Y3P4 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.05□□□□□ -2.4
RHBDD3Q9Y3P4 Y_RNA.704-201ENST00000516851 102 ntBASIC0.05□□□□□ -2.4
RHBDD3Q9Y3P4 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.05□□□□□ -2.4
RHBDD3Q9Y3P4 AP003327.1-201ENST00000529684 127 ntBASIC0.05□□□□□ -2.4
RHBDD3Q9Y3P4 AC012433.1-201ENST00000588916 398 ntBASIC0.05□□□□□ -2.4
RHBDD3Q9Y3P4 RAC1P9-201ENST00000604990 392 ntBASIC0.05□□□□□ -2.4
RHBDD3Q9Y3P4 Z99129.1-201ENST00000612510 255 ntBASIC0.05□□□□□ -2.4
RHBDD3Q9Y3P4 MIR8087-201ENST00000612745 78 ntBASIC0.05□□□□□ -2.4
RHBDD3Q9Y3P4 MIR6128-201ENST00000615528 109 ntBASIC0.05□□□□□ -2.4
RHBDD3Q9Y3P4 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.05□□□□□ -2.4
RHBDD3Q9Y3P4 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.05□□□□□ -2.4
RHBDD3Q9Y3P4 Y_RNA.205-201ENST00000364128 113 ntBASIC0.04□□□□□ -2.4
RHBDD3Q9Y3P4 Y_RNA.466-201ENST00000384294 113 ntBASIC0.04□□□□□ -2.4
RHBDD3Q9Y3P4 SNORA51.10-201ENST00000384418 136 ntBASIC0.04□□□□□ -2.4
RHBDD3Q9Y3P4 AL031003.1-201ENST00000404229 172 ntBASIC0.04□□□□□ -2.4
RHBDD3Q9Y3P4 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC0.04□□□□□ -2.4
RHBDD3Q9Y3P4 RNU6-566P-201ENST00000516790 107 ntBASIC0.04□□□□□ -2.4
RHBDD3Q9Y3P4 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC0.04□□□□□ -2.4
RHBDD3Q9Y3P4 MIR4264-201ENST00000583520 66 ntBASIC0.04□□□□□ -2.4
RHBDD3Q9Y3P4 AC005014.2-201ENST00000607795 599 ntBASIC0.04□□□□□ -2.4
RHBDD3Q9Y3P4 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC0.04□□□□□ -2.4
RHBDD3Q9Y3P4 Y_RNA.48-201ENST00000362710 103 ntBASIC0.03□□□□□ -2.4
RHBDD3Q9Y3P4 SNORA1.2-201ENST00000365189 134 ntBASIC0.03□□□□□ -2.4
RHBDD3Q9Y3P4 Y_RNA.358-201ENST00000365491 99 ntBASIC0.03□□□□□ -2.4
RHBDD3Q9Y3P4 RNU6-716P-201ENST00000365621 103 ntBASIC0.03□□□□□ -2.4
RHBDD3Q9Y3P4 RNU6-815P-201ENST00000384080 113 ntBASIC0.03□□□□□ -2.4
RHBDD3Q9Y3P4 SNORD28B-201ENST00000390993 75 ntBASIC0.03□□□□□ -2.4
RHBDD3Q9Y3P4 RNU6-679P-201ENST00000391003 106 ntBASIC0.03□□□□□ -2.4
RHBDD3Q9Y3P4 RNA5SP63-201ENST00000391225 112 ntBASIC0.03□□□□□ -2.4
RHBDD3Q9Y3P4 SNORD12B-201ENST00000410433 91 ntBASIC0.03□□□□□ -2.4
RHBDD3Q9Y3P4 RNU2-61P-201ENST00000411069 191 ntBASIC0.03□□□□□ -2.4
RHBDD3Q9Y3P4 AL358176.2-201ENST00000425769 204 ntBASIC0.03□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 205.7 ms