Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 SCARNA17.4-201ENST00000614296 143 ntBASIC3.16□□□□□ -1.9
CCDC39Q9UFE4 MIR7515-201ENST00000637837 67 ntBASIC3.16□□□□□ -1.9
CCDC39Q9UFE4 Y_RNA.78-201ENST00000362970 110 ntBASIC3.15□□□□□ -1.91
CCDC39Q9UFE4 RNY1P10-201ENST00000363268 113 ntBASIC3.15□□□□□ -1.91
CCDC39Q9UFE4 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.15□□□□□ -1.91
CCDC39Q9UFE4 RPL30P4-201ENST00000429309 333 ntBASIC3.15□□□□□ -1.91
CCDC39Q9UFE4 S100A11P2-201ENST00000467589 312 ntBASIC3.15□□□□□ -1.91
CCDC39Q9UFE4 RPS27P22-201ENST00000478056 241 ntBASIC3.15□□□□□ -1.91
CCDC39Q9UFE4 SNORA70.24-201ENST00000517233 118 ntBASIC3.15□□□□□ -1.91
CCDC39Q9UFE4 IGKV3-31-201ENST00000523109 329 ntBASIC3.15□□□□□ -1.91
CCDC39Q9UFE4 MIR3117-201ENST00000584034 78 ntBASIC3.15□□□□□ -1.91
CCDC39Q9UFE4 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.15□□□□□ -1.91
CCDC39Q9UFE4 JPX_2.1-201ENST00000614161 69 ntBASIC3.15□□□□□ -1.91
CCDC39Q9UFE4 U6.73-201ENST00000619194 103 ntBASIC3.15□□□□□ -1.91
CCDC39Q9UFE4 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC39Q9UFE4 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC3.15□□□□□ -1.91
CCDC39Q9UFE4 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
CCDC39Q9UFE4 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.14□□□□□ -1.91
CCDC39Q9UFE4 MIR6073-201ENST00000352083 89 ntBASIC3.14□□□□□ -1.91
CCDC39Q9UFE4 RNU6-1083P-201ENST00000384022 107 ntBASIC3.14□□□□□ -1.91
CCDC39Q9UFE4 SNORD61-201ENST00000384252 73 ntBASIC3.14□□□□□ -1.91
CCDC39Q9UFE4 HMGN2P35-201ENST00000412164 270 ntBASIC3.14□□□□□ -1.91
CCDC39Q9UFE4 AL139132.1-201ENST00000431587 344 ntBASIC3.14□□□□□ -1.91
CCDC39Q9UFE4 RPL36AP48-201ENST00000485521 314 ntBASIC3.14□□□□□ -1.91
CCDC39Q9UFE4 RNU6-1270P-201ENST00000517128 108 ntBASIC3.14□□□□□ -1.91
CCDC39Q9UFE4 AC026421.1-201ENST00000519101 163 ntBASIC3.14□□□□□ -1.91
CCDC39Q9UFE4 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC39Q9UFE4 AC079598.5-201ENST00000547460 117 ntBASIC3.14□□□□□ -1.91
CCDC39Q9UFE4 AC103810.1-201ENST00000579873 453 ntBASIC3.14□□□□□ -1.91
CCDC39Q9UFE4 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC39Q9UFE4 uc_338.14-201ENST00000613162 166 ntBASIC3.14□□□□□ -1.91
CCDC39Q9UFE4 AL590808.1-201ENST00000618696 141 ntBASIC3.14□□□□□ -1.91
CCDC39Q9UFE4 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC39Q9UFE4 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC39Q9UFE4 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC39Q9UFE4 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.13□□□□□ -1.91
CCDC39Q9UFE4 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC39Q9UFE4 RNU1-22P-201ENST00000363334 158 ntBASIC3.13□□□□□ -1.91
CCDC39Q9UFE4 RNU6-414P-201ENST00000363705 104 ntBASIC3.13□□□□□ -1.91
CCDC39Q9UFE4 RNU6-1134P-201ENST00000365156 101 ntBASIC3.13□□□□□ -1.91
CCDC39Q9UFE4 Y_RNA.342-201ENST00000365352 113 ntBASIC3.13□□□□□ -1.91
CCDC39Q9UFE4 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
CCDC39Q9UFE4 PGBD4P5-201ENST00000445958 426 ntBASIC3.13□□□□□ -1.91
CCDC39Q9UFE4 AC107297.1-201ENST00000459991 176 ntBASIC3.13□□□□□ -1.91
CCDC39Q9UFE4 AC091826.1-201ENST00000514065 313 ntBASIC3.13□□□□□ -1.91
CCDC39Q9UFE4 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC39Q9UFE4 RNU6-240P-201ENST00000516098 97 ntBASIC3.13□□□□□ -1.91
CCDC39Q9UFE4 RNU6-904P-201ENST00000516206 101 ntBASIC3.13□□□□□ -1.91
CCDC39Q9UFE4 RNU6-830P-201ENST00000516353 107 ntBASIC3.13□□□□□ -1.91
CCDC39Q9UFE4 AC141557.1-201ENST00000540982 400 ntBASIC3.13□□□□□ -1.91
CCDC39Q9UFE4 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.13□□□□□ -1.91
CCDC39Q9UFE4 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC39Q9UFE4 Z82195.2-201ENST00000612348 18351 ntBASIC3.13□□□□□ -1.91
CCDC39Q9UFE4 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC39Q9UFE4 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC3.12□□□□□ -1.91
CCDC39Q9UFE4 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC39Q9UFE4 MIR302B-201ENST00000362188 73 ntBASIC3.12□□□□□ -1.91
CCDC39Q9UFE4 RNU6-228P-201ENST00000362700 106 ntBASIC3.12□□□□□ -1.91
CCDC39Q9UFE4 RNU6-888P-201ENST00000363010 101 ntBASIC3.12□□□□□ -1.91
CCDC39Q9UFE4 Y_RNA.213-201ENST00000364178 111 ntBASIC3.12□□□□□ -1.91
CCDC39Q9UFE4 RNU1-109P-201ENST00000383960 147 ntBASIC3.12□□□□□ -1.91
CCDC39Q9UFE4 MIR627-201ENST00000384979 97 ntBASIC3.12□□□□□ -1.91
CCDC39Q9UFE4 SNORD77.3-201ENST00000391113 65 ntBASIC3.12□□□□□ -1.91
CCDC39Q9UFE4 RNA5SP225-201ENST00000410874 135 ntBASIC3.12□□□□□ -1.91
CCDC39Q9UFE4 RNA5SP492-201ENST00000411330 114 ntBASIC3.12□□□□□ -1.91
CCDC39Q9UFE4 AC016909.1-201ENST00000415916 166 ntBASIC3.12□□□□□ -1.91
CCDC39Q9UFE4 NDUFA4P2-201ENST00000489989 244 ntBASIC3.12□□□□□ -1.91
CCDC39Q9UFE4 MRPS17P9-201ENST00000511924 393 ntBASIC3.12□□□□□ -1.91
CCDC39Q9UFE4 AC097462.1-201ENST00000514125 324 ntBASIC3.12□□□□□ -1.91
CCDC39Q9UFE4 SNORA31.15-201ENST00000516771 132 ntBASIC3.12□□□□□ -1.91
CCDC39Q9UFE4 RNU6-418P-201ENST00000384035 107 ntBASIC3.11□□□□□ -1.91
CCDC39Q9UFE4 SNORA44-201ENST00000384584 132 ntBASIC3.11□□□□□ -1.91
CCDC39Q9UFE4 FO393413.1-201ENST00000402892 195 ntBASIC3.11□□□□□ -1.91
CCDC39Q9UFE4 RNA5SP181-201ENST00000410246 98 ntBASIC3.11□□□□□ -1.91
CCDC39Q9UFE4 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC39Q9UFE4 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC3.11□□□□□ -1.91
CCDC39Q9UFE4 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.11□□□□□ -1.91
CCDC39Q9UFE4 RNU6-948P-201ENST00000516374 107 ntBASIC3.11□□□□□ -1.91
CCDC39Q9UFE4 RNY4P20-201ENST00000516678 93 ntBASIC3.11□□□□□ -1.91
CCDC39Q9UFE4 AC109329.2-201ENST00000519658 482 ntBASIC3.11□□□□□ -1.91
CCDC39Q9UFE4 AC009487.4-201ENST00000624969 3585 ntBASIC3.11□□□□□ -1.91
CCDC39Q9UFE4 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC39Q9UFE4 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
CCDC39Q9UFE4 Y_RNA.93-201ENST00000363066 109 ntBASIC3.1□□□□□ -1.91
CCDC39Q9UFE4 RNU6-1240P-201ENST00000365155 104 ntBASIC3.1□□□□□ -1.91
CCDC39Q9UFE4 SNORA70.4-201ENST00000365509 134 ntBASIC3.1□□□□□ -1.91
CCDC39Q9UFE4 RNU6-1124P-201ENST00000384169 107 ntBASIC3.1□□□□□ -1.91
CCDC39Q9UFE4 MT-TI-201ENST00000387365 69 ntBASIC3.1□□□□□ -1.91
CCDC39Q9UFE4 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
CCDC39Q9UFE4 AC008134.1-201ENST00000420943 193 ntBASIC3.1□□□□□ -1.91
CCDC39Q9UFE4 EIF4EP4-201ENST00000424916 578 ntBASIC3.1□□□□□ -1.91
CCDC39Q9UFE4 AL445687.1-201ENST00000439946 251 ntBASIC3.1□□□□□ -1.91
CCDC39Q9UFE4 RPS26P48-201ENST00000491713 339 ntBASIC3.1□□□□□ -1.91
CCDC39Q9UFE4 RNU7-172P-201ENST00000517125 64 ntBASIC3.1□□□□□ -1.91
CCDC39Q9UFE4 AC084364.2-201ENST00000546924 395 ntBASIC3.1□□□□□ -1.91
CCDC39Q9UFE4 MIR4438-201ENST00000585271 93 ntBASIC3.1□□□□□ -1.91
CCDC39Q9UFE4 AC013412.1-201ENST00000610687 192 ntBASIC3.1□□□□□ -1.91
CCDC39Q9UFE4 ZNF271P-202ENST00000465539 1970 ntBASIC3.1□□□□□ -1.91
CCDC39Q9UFE4 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC39Q9UFE4 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 174 ms