Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 RNU2-12P-201ENST00000517216 168 ntBASIC0.69□□□□□ -2.3
SCN4AP35499 MIR5188-201ENST00000583467 113 ntBASIC0.69□□□□□ -2.3
SCN4AP35499 POLR3GP1-201ENST00000594073 261 ntBASIC0.69□□□□□ -2.3
SCN4AP35499 AC005972.2-201ENST00000604690 348 ntBASIC0.69□□□□□ -2.3
SCN4AP35499 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.69□□□□□ -2.3
SCN4AP35499 SNORD116-13-201ENST00000384408 92 ntBASIC0.68□□□□□ -2.3
SCN4AP35499 MIR608-201ENST00000384820 100 ntBASIC0.68□□□□□ -2.3
SCN4AP35499 RNA5SP63-201ENST00000391225 112 ntBASIC0.68□□□□□ -2.3
SCN4AP35499 RNU6-710P-201ENST00000410424 105 ntBASIC0.68□□□□□ -2.3
SCN4AP35499 RNU6-1199P-201ENST00000411249 104 ntBASIC0.68□□□□□ -2.3
SCN4AP35499 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.68□□□□□ -2.3
SCN4AP35499 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC0.68□□□□□ -2.3
SCN4AP35499 UQCRBP2-201ENST00000447827 297 ntBASIC0.68□□□□□ -2.3
SCN4AP35499 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC0.68□□□□□ -2.3
SCN4AP35499 RNU6-408P-201ENST00000515910 100 ntBASIC0.68□□□□□ -2.3
SCN4AP35499 RNU6-322P-201ENST00000516010 103 ntBASIC0.68□□□□□ -2.3
SCN4AP35499 RNU6-120P-201ENST00000516077 103 ntBASIC0.68□□□□□ -2.3
SCN4AP35499 RNU6-559P-201ENST00000516151 98 ntBASIC0.68□□□□□ -2.3
SCN4AP35499 RNU6-277P-201ENST00000516272 106 ntBASIC0.68□□□□□ -2.3
SCN4AP35499 MIR3684-201ENST00000579779 74 ntBASIC0.68□□□□□ -2.3
SCN4AP35499 SEPT14P17-201ENST00000617978 177 ntBASIC0.68□□□□□ -2.3
SCN4AP35499 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.68□□□□□ -2.3
SCN4AP35499 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
SCN4AP35499 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.68□□□□□ -2.3
SCN4AP35499 Y_RNA.248-201ENST00000364501 109 ntBASIC0.68□□□□□ -2.3
SCN4AP35499 RNU1-36P-201ENST00000365130 165 ntBASIC0.68□□□□□ -2.3
SCN4AP35499 Y_RNA.428-201ENST00000384078 102 ntBASIC0.68□□□□□ -2.3
SCN4AP35499 Y_RNA.474-201ENST00000384341 102 ntBASIC0.68□□□□□ -2.3
SCN4AP35499 MIR136-201ENST00000385207 82 ntBASIC0.68□□□□□ -2.3
SCN4AP35499 RNU6-159P-201ENST00000391080 106 ntBASIC0.68□□□□□ -2.3
SCN4AP35499 PDCL2P1-201ENST00000419302 352 ntBASIC0.68□□□□□ -2.3
SCN4AP35499 SNORA62.5-201ENST00000516634 120 ntBASIC0.68□□□□□ -2.3
SCN4AP35499 RNU7-128P-201ENST00000517247 62 ntBASIC0.68□□□□□ -2.3
SCN4AP35499 AC004817.2-201ENST00000561794 651 ntBASIC0.68□□□□□ -2.3
SCN4AP35499 AC006157.1-201ENST00000611750 366 ntBASIC0.68□□□□□ -2.3
SCN4AP35499 Y_RNA.446-201ENST00000384178 104 ntBASIC0.67□□□□□ -2.3
SCN4AP35499 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
SCN4AP35499 Y_RNA.646-201ENST00000410980 101 ntBASIC0.67□□□□□ -2.3
SCN4AP35499 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC0.67□□□□□ -2.3
SCN4AP35499 AC099799.1-201ENST00000439809 192 ntBASIC0.67□□□□□ -2.3
SCN4AP35499 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.67□□□□□ -2.3
SCN4AP35499 AC093850.1-201ENST00000454121 251 ntBASIC0.67□□□□□ -2.3
SCN4AP35499 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC0.67□□□□□ -2.3
SCN4AP35499 AL133373.1-201ENST00000497098 94 ntBASIC0.67□□□□□ -2.3
SCN4AP35499 AC022868.1-201ENST00000517767 391 ntBASIC0.67□□□□□ -2.3
SCN4AP35499 MIR5701-3-201ENST00000578890 82 ntBASIC0.67□□□□□ -2.3
SCN4AP35499 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.67□□□□□ -2.3
SCN4AP35499 MIR5701-1-201ENST00000585138 82 ntBASIC0.67□□□□□ -2.3
SCN4AP35499 AL117336.2-201ENST00000602435 335 ntBASIC0.67□□□□□ -2.3
SCN4AP35499 AL021879.1-201ENST00000611756 288 ntBASIC0.67□□□□□ -2.3
SCN4AP35499 AL355073.2-201ENST00000612106 557 ntBASIC0.67□□□□□ -2.3
SCN4AP35499 MIR5701-2-201ENST00000615634 82 ntBASIC0.67□□□□□ -2.3
SCN4AP35499 AL669831.3-213ENST00000636676 183 ntBASIC0.67□□□□□ -2.3
SCN4AP35499 Y_RNA.72-201ENST00000362894 103 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 Y_RNA.101-201ENST00000363154 102 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 RNU6-767P-201ENST00000384132 107 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 Y_RNA.456-201ENST00000384232 111 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 RNU6-136P-201ENST00000384663 107 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 RNU5A-5P-201ENST00000411054 116 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 RBMX2P4-201ENST00000441256 376 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC0.66□□□□□ -2.3
SCN4AP35499 AL392103.1-201ENST00000447000 198 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 SUMO1P2-201ENST00000452524 304 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 RNU7-90P-201ENST00000459216 62 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.66□□□□□ -2.3
SCN4AP35499 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.66□□□□□ -2.3
SCN4AP35499 AC105758.1-201ENST00000506038 399 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 SNORA31.2-201ENST00000516019 134 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 SNORD79.1-201ENST00000516069 84 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 SNORA70.22-201ENST00000517160 124 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 VN1R91P-201ENST00000594377 169 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 AL022345.2-201ENST00000606307 135 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 Y_RNA.142-201ENST00000363491 102 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 Y_RNA.148-201ENST00000363557 117 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 RNU6-879P-201ENST00000364328 108 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 Y_RNA.496-201ENST00000384444 101 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 MIR200A-201ENST00000384875 90 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.66□□□□□ -2.3
SCN4AP35499 AC092423.1-201ENST00000430165 186 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 AC236972.2-201ENST00000434979 310 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 AL137792.2-201ENST00000443484 235 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 MTND5P20-201ENST00000448677 143 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 Y_RNA.635-201ENST00000459041 101 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 U8.20-201ENST00000459445 131 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 MTND4P17-201ENST00000470444 350 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 AC091179.3-201ENST00000474761 144 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 RNU6-1170P-201ENST00000515974 106 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.66□□□□□ -2.3
SCN4AP35499 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.66□□□□□ -2.3
SCN4AP35499 AL355375.2-201ENST00000574825 175 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 PRELID3BP2-201ENST00000605362 201 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 LARP7P1-201ENST00000605576 316 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 SNORD58B-201ENST00000607313 66 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 WT1-AS_8.1-201ENST00000615200 275 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 AC067863.3-201ENST00000624172 122 ntBASIC0.66□□□□□ -2.3
SCN4AP35499 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.65□□□□□ -2.31
SCN4AP35499 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.65□□□□□ -2.31
SCN4AP35499 RNA5SP361-201ENST00000362686 118 ntBASIC0.65□□□□□ -2.31
SCN4AP35499 RNU4-76P-201ENST00000364509 141 ntBASIC0.65□□□□□ -2.31
SCN4AP35499 Y_RNA.280-201ENST00000364765 112 ntBASIC0.65□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 180.7 ms