Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC007064.1-201ENST00000412238 351 ntBASIC3.23□□□□□ -1.89
CCDC39Q9UFE4 AC109327.2-201ENST00000448339 378 ntBASIC3.23□□□□□ -1.89
CCDC39Q9UFE4 RNU6-221P-201ENST00000459541 99 ntBASIC3.23□□□□□ -1.89
CCDC39Q9UFE4 ATP5EP1-201ENST00000510257 156 ntBASIC3.23□□□□□ -1.89
CCDC39Q9UFE4 RNU6ATAC17P-201ENST00000516074 71 ntBASIC3.23□□□□□ -1.89
CCDC39Q9UFE4 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.23□□□□□ -1.89
CCDC39Q9UFE4 RNU6-113P-201ENST00000516653 101 ntBASIC3.23□□□□□ -1.89
CCDC39Q9UFE4 MIR3129-201ENST00000581095 76 ntBASIC3.23□□□□□ -1.89
CCDC39Q9UFE4 AL137067.1-201ENST00000615933 120 ntBASIC3.23□□□□□ -1.89
CCDC39Q9UFE4 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC3.23□□□□□ -1.89
CCDC39Q9UFE4 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC39Q9UFE4 RNU6-1209P-201ENST00000363655 107 ntBASIC3.22□□□□□ -1.89
CCDC39Q9UFE4 SNORD32B-201ENST00000364460 84 ntBASIC3.22□□□□□ -1.89
CCDC39Q9UFE4 Y_RNA.366-201ENST00000365540 102 ntBASIC3.22□□□□□ -1.89
CCDC39Q9UFE4 RNU1-57P-201ENST00000384491 166 ntBASIC3.22□□□□□ -1.89
CCDC39Q9UFE4 MIR147B-201ENST00000390185 80 ntBASIC3.22□□□□□ -1.89
CCDC39Q9UFE4 SNORD78.1-201ENST00000390866 65 ntBASIC3.22□□□□□ -1.89
CCDC39Q9UFE4 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC39Q9UFE4 OR9P1P-201ENST00000496431 281 ntBASIC3.22□□□□□ -1.89
CCDC39Q9UFE4 RNU6-126P-201ENST00000516685 103 ntBASIC3.22□□□□□ -1.89
CCDC39Q9UFE4 MIR4662B-201ENST00000579498 81 ntBASIC3.22□□□□□ -1.89
CCDC39Q9UFE4 5S_rRNA.11-201ENST00000618635 84 ntBASIC3.22□□□□□ -1.89
CCDC39Q9UFE4 AC025521.1-201ENST00000621624 286 ntBASIC3.22□□□□□ -1.89
CCDC39Q9UFE4 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
CCDC39Q9UFE4 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC3.21□□□□□ -1.89
CCDC39Q9UFE4 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
CCDC39Q9UFE4 AL513477.1-202ENST00000417061 214 ntBASIC3.21□□□□□ -1.9
CCDC39Q9UFE4 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.21□□□□□ -1.9
CCDC39Q9UFE4 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC39Q9UFE4 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC39Q9UFE4 MIR3605-201ENST00000583214 100 ntBASIC3.21□□□□□ -1.9
CCDC39Q9UFE4 MAPK10-266ENST00000641066 6555 ntBASIC3.21□□□□□ -1.9
CCDC39Q9UFE4 VTRNA1-1-201ENST00000363120 99 ntBASIC3.2□□□□□ -1.9
CCDC39Q9UFE4 Y_RNA.219-201ENST00000364232 113 ntBASIC3.2□□□□□ -1.9
CCDC39Q9UFE4 DEFA7P-201ENST00000382676 285 ntBASIC3.2□□□□□ -1.9
CCDC39Q9UFE4 MIR300-201ENST00000401138 83 ntBASIC3.2□□□□□ -1.9
CCDC39Q9UFE4 SNORA19.1-201ENST00000410656 129 ntBASIC3.2□□□□□ -1.9
CCDC39Q9UFE4 RNU6-57P-201ENST00000411348 103 ntBASIC3.2□□□□□ -1.9
CCDC39Q9UFE4 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC39Q9UFE4 MTATP8P2-201ENST00000435212 202 ntBASIC3.2□□□□□ -1.9
CCDC39Q9UFE4 AC112771.1-201ENST00000463581 102 ntBASIC3.2□□□□□ -1.9
CCDC39Q9UFE4 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC39Q9UFE4 MIR4325-201ENST00000583049 90 ntBASIC3.2□□□□□ -1.9
CCDC39Q9UFE4 MIR4753-201ENST00000585119 83 ntBASIC3.2□□□□□ -1.9
CCDC39Q9UFE4 MALAT1.1-201ENST00000618249 95 ntBASIC3.2□□□□□ -1.9
CCDC39Q9UFE4 Y_RNA.818-201ENST00000618813 71 ntBASIC3.2□□□□□ -1.9
CCDC39Q9UFE4 AC134878.1-201ENST00000619901 243 ntBASIC3.2□□□□□ -1.9
CCDC39Q9UFE4 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC39Q9UFE4 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC39Q9UFE4 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC39Q9UFE4 RNU6-975P-201ENST00000384296 105 ntBASIC3.19□□□□□ -1.9
CCDC39Q9UFE4 AC063976.3-201ENST00000426849 329 ntBASIC3.19□□□□□ -1.9
CCDC39Q9UFE4 AC018634.1-201ENST00000437554 401 ntBASIC3.19□□□□□ -1.9
CCDC39Q9UFE4 RPS4XP11-201ENST00000446897 772 ntBASIC3.19□□□□□ -1.9
CCDC39Q9UFE4 RNU6-1146P-201ENST00000516282 102 ntBASIC3.19□□□□□ -1.9
CCDC39Q9UFE4 RNU6-504P-201ENST00000516568 104 ntBASIC3.19□□□□□ -1.9
CCDC39Q9UFE4 RNU6-158P-201ENST00000517104 100 ntBASIC3.19□□□□□ -1.9
CCDC39Q9UFE4 IGHVIII-67-2-201ENST00000519849 88 ntBASIC3.19□□□□□ -1.9
CCDC39Q9UFE4 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC39Q9UFE4 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC39Q9UFE4 SNORD115-40-201ENST00000606510 82 ntBASIC3.19□□□□□ -1.9
CCDC39Q9UFE4 AC010297.1-201ENST00000623948 149 ntBASIC3.19□□□□□ -1.9
CCDC39Q9UFE4 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
CCDC39Q9UFE4 MIR494-201ENST00000349529 81 ntBASIC3.18□□□□□ -1.9
CCDC39Q9UFE4 Y_RNA.362-201ENST00000365518 110 ntBASIC3.18□□□□□ -1.9
CCDC39Q9UFE4 RNU6-1292P-201ENST00000383856 107 ntBASIC3.18□□□□□ -1.9
CCDC39Q9UFE4 EEF1A1P41-201ENST00000414667 207 ntBASIC3.18□□□□□ -1.9
CCDC39Q9UFE4 AC016717.1-201ENST00000448918 286 ntBASIC3.18□□□□□ -1.9
CCDC39Q9UFE4 RNU7-14P-201ENST00000459331 62 ntBASIC3.18□□□□□ -1.9
CCDC39Q9UFE4 AC096725.1-201ENST00000514266 313 ntBASIC3.18□□□□□ -1.9
CCDC39Q9UFE4 MIR5009-201ENST00000578736 100 ntBASIC3.18□□□□□ -1.9
CCDC39Q9UFE4 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC39Q9UFE4 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
CCDC39Q9UFE4 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC39Q9UFE4 MIR26A1-201ENST00000362205 77 ntBASIC3.17□□□□□ -1.9
CCDC39Q9UFE4 Y_RNA.198-201ENST00000364013 98 ntBASIC3.17□□□□□ -1.9
CCDC39Q9UFE4 Z96811.1-201ENST00000445880 108 ntBASIC3.17□□□□□ -1.9
CCDC39Q9UFE4 AC003982.1-202ENST00000469928 248 ntBASIC3.17□□□□□ -1.9
CCDC39Q9UFE4 AC011406.1-201ENST00000512440 370 ntBASIC3.17□□□□□ -1.9
CCDC39Q9UFE4 RNU6-1149P-201ENST00000516810 97 ntBASIC3.17□□□□□ -1.9
CCDC39Q9UFE4 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC39Q9UFE4 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC39Q9UFE4 AC006435.5-201ENST00000624486 112 ntBASIC3.17□□□□□ -1.9
CCDC39Q9UFE4 MIR2052-201ENST00000636055 55 ntBASIC3.17□□□□□ -1.9
CCDC39Q9UFE4 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC39Q9UFE4 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC39Q9UFE4 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
CCDC39Q9UFE4 MIR208A-201ENST00000362287 71 ntBASIC3.16□□□□□ -1.9
CCDC39Q9UFE4 RNY4P6-201ENST00000363667 96 ntBASIC3.16□□□□□ -1.9
CCDC39Q9UFE4 SNORA68.1-201ENST00000364537 132 ntBASIC3.16□□□□□ -1.9
CCDC39Q9UFE4 AL117342.1-201ENST00000404861 406 ntBASIC3.16□□□□□ -1.9
CCDC39Q9UFE4 UBBP3-201ENST00000445497 241 ntBASIC3.16□□□□□ -1.9
CCDC39Q9UFE4 MIR449C-201ENST00000516047 92 ntBASIC3.16□□□□□ -1.9
CCDC39Q9UFE4 SCARNA17.1-201ENST00000516211 143 ntBASIC3.16□□□□□ -1.9
CCDC39Q9UFE4 SCARNA17.2-201ENST00000516334 143 ntBASIC3.16□□□□□ -1.9
CCDC39Q9UFE4 SCARNA15-202ENST00000516881 127 ntBASIC3.16□□□□□ -1.9
CCDC39Q9UFE4 SCARNA11.3-201ENST00000517276 130 ntBASIC3.16□□□□□ -1.9
CCDC39Q9UFE4 AC068339.1-201ENST00000526965 141 ntBASIC3.16□□□□□ -1.9
CCDC39Q9UFE4 AC011604.1-201ENST00000545978 196 ntBASIC3.16□□□□□ -1.9
CCDC39Q9UFE4 ZNF861P-201ENST00000588126 639 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 262.6 ms