Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MIR208A-201ENST00000362287 71 ntBASIC1.93□□□□□ -2.1
CCDC28AQ8IWP9 RNU6-661P-201ENST00000362409 107 ntBASIC1.93□□□□□ -2.1
CCDC28AQ8IWP9 RNU6-674P-201ENST00000363831 107 ntBASIC1.93□□□□□ -2.1
CCDC28AQ8IWP9 Y_RNA.203-201ENST00000364106 102 ntBASIC1.93□□□□□ -2.1
CCDC28AQ8IWP9 Y_RNA.293-201ENST00000364908 93 ntBASIC1.93□□□□□ -2.1
CCDC28AQ8IWP9 Y_RNA.476-201ENST00000384347 108 ntBASIC1.93□□□□□ -2.1
CCDC28AQ8IWP9 RNU6-1031P-201ENST00000384773 107 ntBASIC1.93□□□□□ -2.1
CCDC28AQ8IWP9 MIR128-1-201ENST00000384921 82 ntBASIC1.93□□□□□ -2.1
CCDC28AQ8IWP9 Y_RNA.638-201ENST00000459374 113 ntBASIC1.93□□□□□ -2.1
CCDC28AQ8IWP9 AC025033.1-201ENST00000463883 194 ntBASIC1.93□□□□□ -2.1
CCDC28AQ8IWP9 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.93□□□□□ -2.1
CCDC28AQ8IWP9 RNU4-71P-201ENST00000516258 113 ntBASIC1.93□□□□□ -2.1
CCDC28AQ8IWP9 SCARNA16.3-201ENST00000516595 184 ntBASIC1.93□□□□□ -2.1
CCDC28AQ8IWP9 AL096840.1-201ENST00000603287 93 ntBASIC1.93□□□□□ -2.1
CCDC28AQ8IWP9 AL442067.1-201ENST00000613261 223 ntBASIC1.93□□□□□ -2.1
CCDC28AQ8IWP9 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
CCDC28AQ8IWP9 Y_RNA.65-201ENST00000362846 100 ntBASIC1.92□□□□□ -2.1
CCDC28AQ8IWP9 Y_RNA.76-201ENST00000362931 109 ntBASIC1.92□□□□□ -2.1
CCDC28AQ8IWP9 RNU6-414P-201ENST00000363705 104 ntBASIC1.92□□□□□ -2.1
CCDC28AQ8IWP9 SNORA70.4-201ENST00000365509 134 ntBASIC1.92□□□□□ -2.1
CCDC28AQ8IWP9 MIR483-201ENST00000385070 76 ntBASIC1.92□□□□□ -2.1
CCDC28AQ8IWP9 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC1.92□□□□□ -2.1
CCDC28AQ8IWP9 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.92□□□□□ -2.1
CCDC28AQ8IWP9 AL135938.1-201ENST00000443141 297 ntBASIC1.92□□□□□ -2.1
CCDC28AQ8IWP9 AL021397.1-201ENST00000451806 248 ntBASIC1.92□□□□□ -2.1
CCDC28AQ8IWP9 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.92□□□□□ -2.1
CCDC28AQ8IWP9 MRPS17P9-201ENST00000511924 393 ntBASIC1.92□□□□□ -2.1
CCDC28AQ8IWP9 RNU6-111P-201ENST00000517179 105 ntBASIC1.92□□□□□ -2.1
CCDC28AQ8IWP9 MIR2681-201ENST00000581814 105 ntBASIC1.92□□□□□ -2.1
CCDC28AQ8IWP9 MIR7106-201ENST00000612419 65 ntBASIC1.92□□□□□ -2.1
CCDC28AQ8IWP9 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.92□□□□□ -2.1
CCDC28AQ8IWP9 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
CCDC28AQ8IWP9 MIR367-201ENST00000362299 68 ntBASIC1.91□□□□□ -2.1
CCDC28AQ8IWP9 RNU6-859P-201ENST00000362728 107 ntBASIC1.91□□□□□ -2.1
CCDC28AQ8IWP9 Y_RNA.253-201ENST00000364562 112 ntBASIC1.91□□□□□ -2.1
CCDC28AQ8IWP9 RNU6-338P-201ENST00000383888 105 ntBASIC1.91□□□□□ -2.1
CCDC28AQ8IWP9 SNORA48.2-201ENST00000390926 124 ntBASIC1.91□□□□□ -2.1
CCDC28AQ8IWP9 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC28AQ8IWP9 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.91□□□□□ -2.1
CCDC28AQ8IWP9 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC28AQ8IWP9 RPL23AP83-201ENST00000434984 473 ntBASIC1.91□□□□□ -2.1
CCDC28AQ8IWP9 HMGN1P7-201ENST00000491722 313 ntBASIC1.91□□□□□ -2.1
CCDC28AQ8IWP9 MIR4724-201ENST00000579485 89 ntBASIC1.91□□□□□ -2.1
CCDC28AQ8IWP9 Y_RNA.802-201ENST00000614892 130 ntBASIC1.91□□□□□ -2.1
CCDC28AQ8IWP9 RNU4-41P-201ENST00000364426 143 ntBASIC1.9□□□□□ -2.11
CCDC28AQ8IWP9 Y_RNA.269-201ENST00000364685 89 ntBASIC1.9□□□□□ -2.11
CCDC28AQ8IWP9 Y_RNA.292-201ENST00000364904 97 ntBASIC1.9□□□□□ -2.11
CCDC28AQ8IWP9 Y_RNA.304-201ENST00000365011 112 ntBASIC1.9□□□□□ -2.11
CCDC28AQ8IWP9 MIR196B-201ENST00000384852 84 ntBASIC1.9□□□□□ -2.11
CCDC28AQ8IWP9 MIR526A2-201ENST00000390198 65 ntBASIC1.9□□□□□ -2.11
CCDC28AQ8IWP9 OR9P1P-201ENST00000496431 281 ntBASIC1.9□□□□□ -2.11
CCDC28AQ8IWP9 RNA5SP356-201ENST00000515972 94 ntBASIC1.9□□□□□ -2.11
CCDC28AQ8IWP9 MIR5688-201ENST00000580619 83 ntBASIC1.9□□□□□ -2.11
CCDC28AQ8IWP9 JPX_2.1-201ENST00000614161 69 ntBASIC1.9□□□□□ -2.11
CCDC28AQ8IWP9 AL591926.4-201ENST00000616895 298 ntBASIC1.9□□□□□ -2.11
CCDC28AQ8IWP9 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
CCDC28AQ8IWP9 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.89□□□□□ -2.11
CCDC28AQ8IWP9 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
CCDC28AQ8IWP9 RNU6-379P-201ENST00000363813 104 ntBASIC1.89□□□□□ -2.11
CCDC28AQ8IWP9 SNORA8.3-201ENST00000384679 139 ntBASIC1.89□□□□□ -2.11
CCDC28AQ8IWP9 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
CCDC28AQ8IWP9 SUMO2P12-201ENST00000405924 140 ntBASIC1.89□□□□□ -2.11
CCDC28AQ8IWP9 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.89□□□□□ -2.11
CCDC28AQ8IWP9 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
CCDC28AQ8IWP9 SNORD116-28-201ENST00000516123 91 ntBASIC1.89□□□□□ -2.11
CCDC28AQ8IWP9 AC100767.1-201ENST00000528178 123 ntBASIC1.89□□□□□ -2.11
CCDC28AQ8IWP9 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.89□□□□□ -2.11
CCDC28AQ8IWP9 AC079600.2-201ENST00000550076 130 ntBASIC1.89□□□□□ -2.11
CCDC28AQ8IWP9 MIR3122-201ENST00000577243 73 ntBASIC1.89□□□□□ -2.11
CCDC28AQ8IWP9 AC067747.1-201ENST00000608026 250 ntBASIC1.89□□□□□ -2.11
CCDC28AQ8IWP9 AC021506.2-201ENST00000612354 169 ntBASIC1.89□□□□□ -2.11
CCDC28AQ8IWP9 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
CCDC28AQ8IWP9 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
CCDC28AQ8IWP9 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
CCDC28AQ8IWP9 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 AC068700.1-201ENST00000565862 3754 ntBASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 MIR126-201ENST00000362291 85 ntBASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 SNORD68-201ENST00000363214 84 ntBASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 RNY1-201ENST00000364228 113 ntBASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 RNU6-439P-201ENST00000384188 106 ntBASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 SNORA12.1-201ENST00000390873 148 ntBASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 RPL30P13-201ENST00000418873 348 ntBASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 HMGN2P19-201ENST00000425149 265 ntBASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 JTBP1-201ENST00000441314 247 ntBASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 SNORD109B-201ENST00000458961 67 ntBASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 SNORD109A-201ENST00000459128 67 ntBASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 COX6CP14-201ENST00000469580 174 ntBASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 RPL23AP42-201ENST00000471152 471 ntBASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 AC099513.1-201ENST00000490423 301 ntBASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 Y_RNA.714-201ENST00000517065 90 ntBASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 AC074050.1-201ENST00000563247 211 ntBASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 AC103810.8-201ENST00000607347 118 ntBASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 AL365265.1-201ENST00000621045 234 ntBASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 U4.3-201ENST00000621047 82 ntBASIC1.88□□□□□ -2.11
CCDC28AQ8IWP9 AC006386.2-201ENST00000624491 75 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 257.6 ms