Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC120024.3-201ENST00000603167 156 ntBASIC0.86□□□□□ -2.27
SHMT2P34897 AL355073.2-201ENST00000612106 557 ntBASIC0.86□□□□□ -2.27
SHMT2P34897 AC138305.3-201ENST00000624988 240 ntBASIC0.86□□□□□ -2.27
SHMT2P34897 U8.5-201ENST00000364528 136 ntBASIC0.85□□□□□ -2.27
SHMT2P34897 SNORD114-22-201ENST00000365423 72 ntBASIC0.85□□□□□ -2.27
SHMT2P34897 Y_RNA.390-201ENST00000383932 102 ntBASIC0.85□□□□□ -2.27
SHMT2P34897 SNORD12-201ENST00000391002 90 ntBASIC0.85□□□□□ -2.27
SHMT2P34897 MIR891A-201ENST00000401237 79 ntBASIC0.85□□□□□ -2.27
SHMT2P34897 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0.85□□□□□ -2.27
SHMT2P34897 RPEP5-201ENST00000441137 268 ntBASIC0.85□□□□□ -2.27
SHMT2P34897 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.85□□□□□ -2.27
SHMT2P34897 CYCTP-201ENST00000504253 315 ntBASIC0.85□□□□□ -2.27
SHMT2P34897 RNU6-947P-201ENST00000516264 106 ntBASIC0.85□□□□□ -2.27
SHMT2P34897 SNORD111.1-201ENST00000516421 86 ntBASIC0.85□□□□□ -2.27
SHMT2P34897 AC144568.1-201ENST00000520139 137 ntBASIC0.85□□□□□ -2.27
SHMT2P34897 MIR4452-201ENST00000583004 71 ntBASIC0.85□□□□□ -2.27
SHMT2P34897 AC211469.2-201ENST00000605461 205 ntBASIC0.85□□□□□ -2.27
SHMT2P34897 AC004832.4-201ENST00000608952 331 ntBASIC0.85□□□□□ -2.27
SHMT2P34897 AC011476.5-201ENST00000615594 130 ntBASIC0.85□□□□□ -2.27
SHMT2P34897 AL591926.4-201ENST00000616895 298 ntBASIC0.85□□□□□ -2.27
SHMT2P34897 AL008636.1-201ENST00000625038 1018 ntBASIC0.85□□□□□ -2.27
SHMT2P34897 AC099654.14-201ENST00000638599 341 ntBASIC0.85□□□□□ -2.27
SHMT2P34897 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.84□□□□□ -2.27
SHMT2P34897 Y_RNA.172-201ENST00000363765 102 ntBASIC0.84□□□□□ -2.27
SHMT2P34897 Y_RNA.226-201ENST00000364337 114 ntBASIC0.84□□□□□ -2.27
SHMT2P34897 RNU6-1297P-201ENST00000384415 104 ntBASIC0.84□□□□□ -2.27
SHMT2P34897 SNORD116-29-201ENST00000384516 83 ntBASIC0.84□□□□□ -2.27
SHMT2P34897 AC138393.2-201ENST00000414742 246 ntBASIC0.84□□□□□ -2.27
SHMT2P34897 AC063976.4-201ENST00000421971 163 ntBASIC0.84□□□□□ -2.27
SHMT2P34897 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.84□□□□□ -2.27
SHMT2P34897 AC093019.1-201ENST00000443135 252 ntBASIC0.84□□□□□ -2.27
SHMT2P34897 snoU13.25-201ENST00000458945 104 ntBASIC0.84□□□□□ -2.27
SHMT2P34897 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.84□□□□□ -2.27
SHMT2P34897 RNU6-277P-201ENST00000516272 106 ntBASIC0.84□□□□□ -2.27
SHMT2P34897 AC005176.2-201ENST00000596933 147 ntBASIC0.84□□□□□ -2.27
SHMT2P34897 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.84□□□□□ -2.27
SHMT2P34897 AC006380.1-201ENST00000603598 186 ntBASIC0.84□□□□□ -2.27
SHMT2P34897 AL096861.1-201ENST00000610899 123 ntBASIC0.84□□□□□ -2.27
SHMT2P34897 U2.1-201ENST00000618978 145 ntBASIC0.84□□□□□ -2.27
SHMT2P34897 AC027279.3-201ENST00000625055 122 ntBASIC0.84□□□□□ -2.27
SHMT2P34897 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.84□□□□□ -2.27
SHMT2P34897 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.84□□□□□ -2.28
SHMT2P34897 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC0.83□□□□□ -2.28
SHMT2P34897 SNORD68-201ENST00000363214 84 ntBASIC0.83□□□□□ -2.28
SHMT2P34897 Y_RNA.336-201ENST00000365307 109 ntBASIC0.83□□□□□ -2.28
SHMT2P34897 RNU6-1283P-201ENST00000365314 105 ntBASIC0.83□□□□□ -2.28
SHMT2P34897 RNU6-20P-201ENST00000384106 107 ntBASIC0.83□□□□□ -2.28
SHMT2P34897 RNY4P36-201ENST00000391116 96 ntBASIC0.83□□□□□ -2.28
SHMT2P34897 POLR2J4-204ENST00000418424 324 ntBASIC0.83□□□□□ -2.28
SHMT2P34897 PIGPP3-201ENST00000425307 415 ntBASIC0.83□□□□□ -2.28
SHMT2P34897 RPL39P39-201ENST00000455840 151 ntBASIC0.83□□□□□ -2.28
SHMT2P34897 RPS26P48-201ENST00000491713 339 ntBASIC0.83□□□□□ -2.28
SHMT2P34897 RNU6-911P-201ENST00000516523 104 ntBASIC0.83□□□□□ -2.28
SHMT2P34897 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC0.83□□□□□ -2.28
SHMT2P34897 MIR4661-201ENST00000582720 75 ntBASIC0.83□□□□□ -2.28
SHMT2P34897 MIR4762-201ENST00000585261 75 ntBASIC0.83□□□□□ -2.28
SHMT2P34897 FAM106DP-201ENST00000586416 501 ntBASIC0.83□□□□□ -2.28
SHMT2P34897 FAM71BP1-201ENST00000604431 523 ntBASIC0.83□□□□□ -2.28
SHMT2P34897 AC133104.2-201ENST00000615272 193 ntBASIC0.83□□□□□ -2.28
SHMT2P34897 MTND4LP32-201ENST00000636111 270 ntBASIC0.83□□□□□ -2.28
SHMT2P34897 MIR373-201ENST00000362273 69 ntBASIC0.82□□□□□ -2.28
SHMT2P34897 Y_RNA.314-201ENST00000365114 102 ntBASIC0.82□□□□□ -2.28
SHMT2P34897 Y_RNA.446-201ENST00000384178 104 ntBASIC0.82□□□□□ -2.28
SHMT2P34897 RNU6-708P-201ENST00000384217 107 ntBASIC0.82□□□□□ -2.28
SHMT2P34897 RNU6-163P-201ENST00000384396 106 ntBASIC0.82□□□□□ -2.28
SHMT2P34897 MIR628-201ENST00000385229 95 ntBASIC0.82□□□□□ -2.28
SHMT2P34897 Y_RNA.605-201ENST00000410577 105 ntBASIC0.82□□□□□ -2.28
SHMT2P34897 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.82□□□□□ -2.28
SHMT2P34897 AC002429.1-201ENST00000437672 148 ntBASIC0.82□□□□□ -2.28
SHMT2P34897 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.82□□□□□ -2.28
SHMT2P34897 CHEK2P4-201ENST00000450340 246 ntBASIC0.82□□□□□ -2.28
SHMT2P34897 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.82□□□□□ -2.28
SHMT2P34897 AC114811.1-201ENST00000507207 168 ntBASIC0.82□□□□□ -2.28
SHMT2P34897 SNORA25.10-201ENST00000515926 124 ntBASIC0.82□□□□□ -2.28
SHMT2P34897 RNU6-155P-201ENST00000516347 100 ntBASIC0.82□□□□□ -2.28
SHMT2P34897 AC011604.1-201ENST00000545978 196 ntBASIC0.82□□□□□ -2.28
SHMT2P34897 MIR3973-201ENST00000579824 107 ntBASIC0.82□□□□□ -2.28
SHMT2P34897 MIR4659A-201ENST00000580269 81 ntBASIC0.82□□□□□ -2.28
SHMT2P34897 U6.92-201ENST00000636464 89 ntBASIC0.82□□□□□ -2.28
SHMT2P34897 Y_RNA.27-201ENST00000362540 103 ntBASIC0.81□□□□□ -2.28
SHMT2P34897 RNU6-490P-201ENST00000362985 107 ntBASIC0.81□□□□□ -2.28
SHMT2P34897 RNU6-626P-201ENST00000363354 107 ntBASIC0.81□□□□□ -2.28
SHMT2P34897 Y_RNA.146-201ENST00000363549 102 ntBASIC0.81□□□□□ -2.28
SHMT2P34897 Y_RNA.259-201ENST00000364619 101 ntBASIC0.81□□□□□ -2.28
SHMT2P34897 RNU6-969P-201ENST00000383900 105 ntBASIC0.81□□□□□ -2.28
SHMT2P34897 RNU6-1040P-201ENST00000383974 107 ntBASIC0.81□□□□□ -2.28
SHMT2P34897 MIR520E-201ENST00000384867 87 ntBASIC0.81□□□□□ -2.28
SHMT2P34897 MIR1287-201ENST00000408492 90 ntBASIC0.81□□□□□ -2.28
SHMT2P34897 Y_RNA.621-201ENST00000411065 96 ntBASIC0.81□□□□□ -2.28
SHMT2P34897 RNA5SP247-201ENST00000411181 105 ntBASIC0.81□□□□□ -2.28
SHMT2P34897 AC096644.2-201ENST00000429278 159 ntBASIC0.81□□□□□ -2.28
SHMT2P34897 AC099799.1-201ENST00000439809 192 ntBASIC0.81□□□□□ -2.28
SHMT2P34897 LINC01399-202ENST00000458450 244 ntBASIC0.81□□□□□ -2.28
SHMT2P34897 SNORD124-201ENST00000459577 104 ntBASIC0.81□□□□□ -2.28
SHMT2P34897 PRDX4P1-201ENST00000507189 574 ntBASIC0.81□□□□□ -2.28
SHMT2P34897 RNU6-436P-201ENST00000516171 114 ntBASIC0.81□□□□□ -2.28
SHMT2P34897 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.81□□□□□ -2.28
SHMT2P34897 MIR4698-201ENST00000577795 80 ntBASIC0.81□□□□□ -2.28
SHMT2P34897 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.81□□□□□ -2.28
SHMT2P34897 MIR4653-201ENST00000585107 83 ntBASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 201.8 ms