Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL606517.2-201ENST00000442855 241 ntBASIC1.6□□□□□ -2.15
NKX3-1Q99801 RPS29P11-201ENST00000496507 171 ntBASIC1.6□□□□□ -2.15
NKX3-1Q99801 RNU6-1146P-201ENST00000516282 102 ntBASIC1.6□□□□□ -2.15
NKX3-1Q99801 RNU6-548P-201ENST00000517083 115 ntBASIC1.6□□□□□ -2.15
NKX3-1Q99801 RNA5SP437-201ENST00000517249 129 ntBASIC1.6□□□□□ -2.15
NKX3-1Q99801 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.6□□□□□ -2.15
NKX3-1Q99801 AC022432.1-201ENST00000595739 310 ntBASIC1.6□□□□□ -2.15
NKX3-1Q99801 AC010615.1-201ENST00000594254 1764 ntBASIC1.59□□□□□ -2.15
NKX3-1Q99801 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.59□□□□□ -2.15
NKX3-1Q99801 Y_RNA.214-201ENST00000364201 112 ntBASIC1.59□□□□□ -2.15
NKX3-1Q99801 RNU6-1019P-201ENST00000364424 107 ntBASIC1.59□□□□□ -2.15
NKX3-1Q99801 Y_RNA.286-201ENST00000364813 102 ntBASIC1.59□□□□□ -2.15
NKX3-1Q99801 RNU6-806P-201ENST00000365147 105 ntBASIC1.59□□□□□ -2.15
NKX3-1Q99801 RNU6-639P-201ENST00000384074 107 ntBASIC1.59□□□□□ -2.15
NKX3-1Q99801 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
NKX3-1Q99801 RNA5SP212-201ENST00000391223 107 ntBASIC1.59□□□□□ -2.15
NKX3-1Q99801 RNU6-121P-201ENST00000410525 99 ntBASIC1.59□□□□□ -2.15
NKX3-1Q99801 EBAG9P1-201ENST00000418955 543 ntBASIC1.59□□□□□ -2.15
NKX3-1Q99801 AC244636.1-201ENST00000421152 228 ntBASIC1.59□□□□□ -2.15
NKX3-1Q99801 ELOCP20-201ENST00000422460 345 ntBASIC1.59□□□□□ -2.15
NKX3-1Q99801 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.59□□□□□ -2.15
NKX3-1Q99801 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.59□□□□□ -2.15
NKX3-1Q99801 RPL23AP6-201ENST00000446637 472 ntBASIC1.59□□□□□ -2.15
NKX3-1Q99801 AC098869.1-201ENST00000481627 292 ntBASIC1.59□□□□□ -2.15
NKX3-1Q99801 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.59□□□□□ -2.15
NKX3-1Q99801 RNU6-436P-201ENST00000516171 114 ntBASIC1.59□□□□□ -2.15
NKX3-1Q99801 RNU6-155P-201ENST00000516347 100 ntBASIC1.59□□□□□ -2.15
NKX3-1Q99801 SNORA31.17-201ENST00000516953 127 ntBASIC1.59□□□□□ -2.15
NKX3-1Q99801 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.59□□□□□ -2.15
NKX3-1Q99801 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.59□□□□□ -2.15
NKX3-1Q99801 AL137100.2-201ENST00000555786 315 ntBASIC1.59□□□□□ -2.15
NKX3-1Q99801 MIR4419B-201ENST00000577260 68 ntBASIC1.59□□□□□ -2.15
NKX3-1Q99801 MIR4438-201ENST00000585271 93 ntBASIC1.59□□□□□ -2.15
NKX3-1Q99801 AC069114.2-201ENST00000604699 304 ntBASIC1.59□□□□□ -2.15
NKX3-1Q99801 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.59□□□□□ -2.16
NKX3-1Q99801 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.58□□□□□ -2.16
NKX3-1Q99801 RNA5SP363-201ENST00000365072 115 ntBASIC1.58□□□□□ -2.16
NKX3-1Q99801 SNORA4.2-201ENST00000365313 147 ntBASIC1.58□□□□□ -2.16
NKX3-1Q99801 RNA5SP109-201ENST00000391010 116 ntBASIC1.58□□□□□ -2.16
NKX3-1Q99801 SNORA40.18-201ENST00000391200 128 ntBASIC1.58□□□□□ -2.16
NKX3-1Q99801 RNU6-985P-201ENST00000410182 104 ntBASIC1.58□□□□□ -2.16
NKX3-1Q99801 AC009310.1-201ENST00000414414 451 ntBASIC1.58□□□□□ -2.16
NKX3-1Q99801 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.58□□□□□ -2.16
NKX3-1Q99801 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.58□□□□□ -2.16
NKX3-1Q99801 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.58□□□□□ -2.16
NKX3-1Q99801 MRPS10P1-201ENST00000448483 130 ntBASIC1.58□□□□□ -2.16
NKX3-1Q99801 RNA5SP20-201ENST00000515976 84 ntBASIC1.58□□□□□ -2.16
NKX3-1Q99801 RNU6-764P-201ENST00000516396 105 ntBASIC1.58□□□□□ -2.16
NKX3-1Q99801 RNU6-63P-201ENST00000516690 95 ntBASIC1.58□□□□□ -2.16
NKX3-1Q99801 Y_RNA.721-201ENST00000517207 102 ntBASIC1.58□□□□□ -2.16
NKX3-1Q99801 AC131281.1-201ENST00000522984 164 ntBASIC1.58□□□□□ -2.16
NKX3-1Q99801 DEFB122-202ENST00000569013 197 ntBASIC1.58□□□□□ -2.16
NKX3-1Q99801 MIR3122-201ENST00000577243 73 ntBASIC1.58□□□□□ -2.16
NKX3-1Q99801 AC010900.2-201ENST00000604508 210 ntBASIC1.58□□□□□ -2.16
NKX3-1Q99801 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
NKX3-1Q99801 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
NKX3-1Q99801 RNU1-22P-201ENST00000363334 158 ntBASIC1.57□□□□□ -2.16
NKX3-1Q99801 Y_RNA.172-201ENST00000363765 102 ntBASIC1.57□□□□□ -2.16
NKX3-1Q99801 Y_RNA.210-201ENST00000364161 110 ntBASIC1.57□□□□□ -2.16
NKX3-1Q99801 Y_RNA.230-201ENST00000364348 109 ntBASIC1.57□□□□□ -2.16
NKX3-1Q99801 Y_RNA.329-201ENST00000365209 107 ntBASIC1.57□□□□□ -2.16
NKX3-1Q99801 Y_RNA.361-201ENST00000365515 120 ntBASIC1.57□□□□□ -2.16
NKX3-1Q99801 RNU6-439P-201ENST00000384188 106 ntBASIC1.57□□□□□ -2.16
NKX3-1Q99801 Y_RNA.462-201ENST00000384268 102 ntBASIC1.57□□□□□ -2.16
NKX3-1Q99801 RNU6-136P-201ENST00000384663 107 ntBASIC1.57□□□□□ -2.16
NKX3-1Q99801 RNA5SP323-201ENST00000391094 133 ntBASIC1.57□□□□□ -2.16
NKX3-1Q99801 AL031003.1-201ENST00000404229 172 ntBASIC1.57□□□□□ -2.16
NKX3-1Q99801 AC073910.1-201ENST00000445047 438 ntBASIC1.57□□□□□ -2.16
NKX3-1Q99801 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.57□□□□□ -2.16
NKX3-1Q99801 HMGB3P17-201ENST00000504195 649 ntBASIC1.57□□□□□ -2.16
NKX3-1Q99801 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.57□□□□□ -2.16
NKX3-1Q99801 RNU1-142P-201ENST00000516682 145 ntBASIC1.57□□□□□ -2.16
NKX3-1Q99801 RNU7-110P-201ENST00000516891 62 ntBASIC1.57□□□□□ -2.16
NKX3-1Q99801 RNU6-295P-201ENST00000516901 104 ntBASIC1.57□□□□□ -2.16
NKX3-1Q99801 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.57□□□□□ -2.16
NKX3-1Q99801 AC022254.1-201ENST00000567857 235 ntBASIC1.57□□□□□ -2.16
NKX3-1Q99801 MIR4300-201ENST00000581016 96 ntBASIC1.57□□□□□ -2.16
NKX3-1Q99801 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.57□□□□□ -2.16
NKX3-1Q99801 AC006380.1-201ENST00000603598 186 ntBASIC1.57□□□□□ -2.16
NKX3-1Q99801 AC011373.1-201ENST00000607270 237 ntBASIC1.57□□□□□ -2.16
NKX3-1Q99801 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.57□□□□□ -2.16
NKX3-1Q99801 AL359075.3-201ENST00000613288 217 ntBASIC1.57□□□□□ -2.16
NKX3-1Q99801 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.57□□□□□ -2.16
NKX3-1Q99801 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.56□□□□□ -2.16
NKX3-1Q99801 Y_RNA.183-201ENST00000363882 113 ntBASIC1.56□□□□□ -2.16
NKX3-1Q99801 RNU6-324P-201ENST00000363957 106 ntBASIC1.56□□□□□ -2.16
NKX3-1Q99801 SNORA63D-201ENST00000364359 132 ntBASIC1.56□□□□□ -2.16
NKX3-1Q99801 SNORD48-201ENST00000364953 64 ntBASIC1.56□□□□□ -2.16
NKX3-1Q99801 Y_RNA.331-201ENST00000365267 102 ntBASIC1.56□□□□□ -2.16
NKX3-1Q99801 SNORA63.7-201ENST00000365579 123 ntBASIC1.56□□□□□ -2.16
NKX3-1Q99801 SNORD63-201ENST00000384262 68 ntBASIC1.56□□□□□ -2.16
NKX3-1Q99801 RNU6-102P-201ENST00000384485 104 ntBASIC1.56□□□□□ -2.16
NKX3-1Q99801 MIR764-201ENST00000390811 85 ntBASIC1.56□□□□□ -2.16
NKX3-1Q99801 MIR873-201ENST00000401120 77 ntBASIC1.56□□□□□ -2.16
NKX3-1Q99801 RNU5A-5P-201ENST00000411054 116 ntBASIC1.56□□□□□ -2.16
NKX3-1Q99801 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.56□□□□□ -2.16
NKX3-1Q99801 RPS27P1-201ENST00000450552 247 ntBASIC1.56□□□□□ -2.16
NKX3-1Q99801 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.56□□□□□ -2.16
NKX3-1Q99801 RNU7-99P-201ENST00000516271 62 ntBASIC1.56□□□□□ -2.16
NKX3-1Q99801 RNU7-172P-201ENST00000517125 64 ntBASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 168.6 ms