Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 Y_RNA.348-201ENST00000365403 103 ntBASIC3.5□□□□□ -1.85
CCDC39Q9UFE4 RNA5SP201-201ENST00000410316 124 ntBASIC3.5□□□□□ -1.85
CCDC39Q9UFE4 RNA5SP120-201ENST00000410900 112 ntBASIC3.5□□□□□ -1.85
CCDC39Q9UFE4 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC39Q9UFE4 AC027124.2-201ENST00000428249 105 ntBASIC3.5□□□□□ -1.85
CCDC39Q9UFE4 RPL39P40-201ENST00000445481 146 ntBASIC3.5□□□□□ -1.85
CCDC39Q9UFE4 HMGN2P10-201ENST00000448085 265 ntBASIC3.5□□□□□ -1.85
CCDC39Q9UFE4 RN7SKP19-201ENST00000516016 252 ntBASIC3.5□□□□□ -1.85
CCDC39Q9UFE4 RNU6-197P-201ENST00000516680 100 ntBASIC3.5□□□□□ -1.85
CCDC39Q9UFE4 ACA59.2-201ENST00000517061 156 ntBASIC3.5□□□□□ -1.85
CCDC39Q9UFE4 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.5□□□□□ -1.85
CCDC39Q9UFE4 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC39Q9UFE4 AC131055.1-201ENST00000584626 316 ntBASIC3.5□□□□□ -1.85
CCDC39Q9UFE4 AL034555.1-201ENST00000604816 211 ntBASIC3.5□□□□□ -1.85
CCDC39Q9UFE4 PCGEM1.1-201ENST00000613431 131 ntBASIC3.5□□□□□ -1.85
CCDC39Q9UFE4 TCL6_2.1-201ENST00000615162 119 ntBASIC3.5□□□□□ -1.85
CCDC39Q9UFE4 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC39Q9UFE4 MIR622-201ENST00000638396 96 ntBASIC3.5□□□□□ -1.85
CCDC39Q9UFE4 AC103988.1-201ENST00000566382 2177 ntBASIC3.5□□□□□ -1.85
CCDC39Q9UFE4 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.5□□□□□ -1.85
CCDC39Q9UFE4 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC39Q9UFE4 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.5□□□□□ -1.85
CCDC39Q9UFE4 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC39Q9UFE4 AC010680.1-201ENST00000590024 3590 ntBASIC3.49□□□□□ -1.85
CCDC39Q9UFE4 RNU6-508P-201ENST00000363231 103 ntBASIC3.49□□□□□ -1.85
CCDC39Q9UFE4 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.49□□□□□ -1.85
CCDC39Q9UFE4 Y_RNA.346-201ENST00000365385 112 ntBASIC3.49□□□□□ -1.85
CCDC39Q9UFE4 SNORA7.4-201ENST00000384249 137 ntBASIC3.49□□□□□ -1.85
CCDC39Q9UFE4 Y_RNA.587-201ENST00000391210 103 ntBASIC3.49□□□□□ -1.85
CCDC39Q9UFE4 AL603914.1-201ENST00000401964 204 ntBASIC3.49□□□□□ -1.85
CCDC39Q9UFE4 RNU6-554P-201ENST00000410466 106 ntBASIC3.49□□□□□ -1.85
CCDC39Q9UFE4 RN7SKP27-201ENST00000410684 333 ntBASIC3.49□□□□□ -1.85
CCDC39Q9UFE4 CYCSP48-201ENST00000417124 323 ntBASIC3.49□□□□□ -1.85
CCDC39Q9UFE4 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC39Q9UFE4 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.49□□□□□ -1.85
CCDC39Q9UFE4 RN7SL633P-201ENST00000488974 297 ntBASIC3.49□□□□□ -1.85
CCDC39Q9UFE4 RPS29P20-201ENST00000489592 171 ntBASIC3.49□□□□□ -1.85
CCDC39Q9UFE4 Y_RNA.690-201ENST00000516603 95 ntBASIC3.49□□□□□ -1.85
CCDC39Q9UFE4 RNU6-762P-201ENST00000517107 102 ntBASIC3.49□□□□□ -1.85
CCDC39Q9UFE4 SNORA31.21-201ENST00000517180 77 ntBASIC3.49□□□□□ -1.85
CCDC39Q9UFE4 AC027176.1-201ENST00000560204 514 ntBASIC3.49□□□□□ -1.85
CCDC39Q9UFE4 MIR1254-2-201ENST00000579553 63 ntBASIC3.49□□□□□ -1.85
CCDC39Q9UFE4 AC025166.1-201ENST00000612411 163 ntBASIC3.49□□□□□ -1.85
CCDC39Q9UFE4 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
CCDC39Q9UFE4 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC39Q9UFE4 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC39Q9UFE4 RNA5SP139-201ENST00000364340 117 ntBASIC3.48□□□□□ -1.85
CCDC39Q9UFE4 RNU6-136P-201ENST00000384663 107 ntBASIC3.48□□□□□ -1.85
CCDC39Q9UFE4 AL590004.2-201ENST00000404787 371 ntBASIC3.48□□□□□ -1.85
CCDC39Q9UFE4 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.48□□□□□ -1.85
CCDC39Q9UFE4 AL365496.1-201ENST00000426885 215 ntBASIC3.48□□□□□ -1.85
CCDC39Q9UFE4 RNU7-23P-201ENST00000459465 62 ntBASIC3.48□□□□□ -1.85
CCDC39Q9UFE4 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC39Q9UFE4 AC021739.1-201ENST00000559631 174 ntBASIC3.48□□□□□ -1.85
CCDC39Q9UFE4 MIR5006-201ENST00000583027 110 ntBASIC3.48□□□□□ -1.85
CCDC39Q9UFE4 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC39Q9UFE4 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC39Q9UFE4 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC39Q9UFE4 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
CCDC39Q9UFE4 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
CCDC39Q9UFE4 RNU6-309P-201ENST00000364573 106 ntBASIC3.47□□□□□ -1.85
CCDC39Q9UFE4 SNORA67.2-201ENST00000384300 149 ntBASIC3.47□□□□□ -1.85
CCDC39Q9UFE4 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC39Q9UFE4 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC39Q9UFE4 RN7SL807P-201ENST00000470923 297 ntBASIC3.47□□□□□ -1.85
CCDC39Q9UFE4 RPS29P2-201ENST00000479278 136 ntBASIC3.47□□□□□ -1.85
CCDC39Q9UFE4 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC39Q9UFE4 UBL5P2-201ENST00000583788 219 ntBASIC3.47□□□□□ -1.85
CCDC39Q9UFE4 AP003357.1-201ENST00000604497 148 ntBASIC3.47□□□□□ -1.85
CCDC39Q9UFE4 MIR7112-201ENST00000616126 65 ntBASIC3.47□□□□□ -1.85
CCDC39Q9UFE4 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC39Q9UFE4 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.47□□□□□ -1.85
CCDC39Q9UFE4 AL355596.1-201ENST00000565399 3996 ntBASIC3.47□□□□□ -1.85
CCDC39Q9UFE4 AC093010.3-201ENST00000570269 15214 ntBASIC3.46□□□□□ -1.85
CCDC39Q9UFE4 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.86
CCDC39Q9UFE4 U3.8-201ENST00000363675 217 ntBASIC3.46□□□□□ -1.86
CCDC39Q9UFE4 SNORD18B-201ENST00000365659 72 ntBASIC3.46□□□□□ -1.86
CCDC39Q9UFE4 SNORA18.2-201ENST00000383865 132 ntBASIC3.46□□□□□ -1.86
CCDC39Q9UFE4 RNU6-484P-201ENST00000384016 107 ntBASIC3.46□□□□□ -1.86
CCDC39Q9UFE4 RNVU1-14-201ENST00000384770 164 ntBASIC3.46□□□□□ -1.86
CCDC39Q9UFE4 MIR518C-201ENST00000384822 101 ntBASIC3.46□□□□□ -1.86
CCDC39Q9UFE4 SNORA26.7-201ENST00000391288 122 ntBASIC3.46□□□□□ -1.86
CCDC39Q9UFE4 RN7SKP101-201ENST00000411376 320 ntBASIC3.46□□□□□ -1.86
CCDC39Q9UFE4 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC39Q9UFE4 AC090515.1-201ENST00000465295 476 ntBASIC3.46□□□□□ -1.86
CCDC39Q9UFE4 EIF4A1P12-201ENST00000551910 141 ntBASIC3.46□□□□□ -1.86
CCDC39Q9UFE4 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.46□□□□□ -1.86
CCDC39Q9UFE4 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.46□□□□□ -1.86
CCDC39Q9UFE4 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC39Q9UFE4 AC091564.4-201ENST00000533934 2194 ntBASIC3.45□□□□□ -1.86
CCDC39Q9UFE4 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.45□□□□□ -1.86
CCDC39Q9UFE4 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC39Q9UFE4 MTND5P18-201ENST00000445624 1801 ntBASIC3.45□□□□□ -1.86
CCDC39Q9UFE4 Y_RNA.124-201ENST00000363339 93 ntBASIC3.45□□□□□ -1.86
CCDC39Q9UFE4 RNU6-1131P-201ENST00000364955 107 ntBASIC3.45□□□□□ -1.86
CCDC39Q9UFE4 Y_RNA.432-201ENST00000384087 111 ntBASIC3.45□□□□□ -1.86
CCDC39Q9UFE4 RNU6-49P-201ENST00000384256 107 ntBASIC3.45□□□□□ -1.86
CCDC39Q9UFE4 Y_RNA.558-201ENST00000384685 113 ntBASIC3.45□□□□□ -1.86
CCDC39Q9UFE4 MIR34B-201ENST00000385076 84 ntBASIC3.45□□□□□ -1.86
CCDC39Q9UFE4 SNORD72-201ENST00000390994 80 ntBASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 182.3 ms