Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MIR4659A-201ENST00000580269 81 ntBASIC1.73□□□□□ -2.13
NKX3-1Q99801 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.73□□□□□ -2.13
NKX3-1Q99801 AC008749.1-201ENST00000597650 306 ntBASIC1.73□□□□□ -2.13
NKX3-1Q99801 AC104695.3-201ENST00000604052 296 ntBASIC1.73□□□□□ -2.13
NKX3-1Q99801 AL627230.6-201ENST00000611129 280 ntBASIC1.73□□□□□ -2.13
NKX3-1Q99801 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.73□□□□□ -2.13
NKX3-1Q99801 AC091932.3-201ENST00000624223 323 ntBASIC1.73□□□□□ -2.13
NKX3-1Q99801 ZNF702P-202ENST00000434269 1966 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 Y_RNA.27-201ENST00000362540 103 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 RNU6-862P-201ENST00000362804 105 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 RNU6-454P-201ENST00000364292 107 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 RNU4-76P-201ENST00000364509 141 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
NKX3-1Q99801 AL512604.1-201ENST00000404812 257 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 MIR1302-11-201ENST00000408051 138 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 MIR1302-9-201ENST00000408365 138 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 MIR1302-10-201ENST00000408734 138 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.72□□□□□ -2.13
NKX3-1Q99801 RAB28P5-201ENST00000427490 651 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 NDUFB4P10-201ENST00000452541 359 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.72□□□□□ -2.13
NKX3-1Q99801 AC112492.4-201ENST00000456549 352 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 RNU6-625P-201ENST00000459412 107 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 RNU6-221P-201ENST00000459541 99 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 MRPS17P9-201ENST00000511924 393 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 AC011406.1-201ENST00000512440 370 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 AL356055.1-201ENST00000602528 446 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 MIR1302-2-201ENST00000607096 138 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 U2.15-201ENST00000611544 191 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 U2.16-201ENST00000613119 191 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 U2.12-201ENST00000613778 191 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 U2.20-201ENST00000613956 192 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 U2.9-201ENST00000615427 191 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 AC240442.1-201ENST00000616055 283 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 U2.11-201ENST00000616345 191 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 U2.2-201ENST00000616535 191 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 U2.3-201ENST00000617785 191 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 U2.19-201ENST00000618602 191 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 RNU2-1-201ENST00000618664 191 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 U2.6-201ENST00000619225 191 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 U2.5-201ENST00000619465 191 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 U2.10-201ENST00000620268 191 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 AC009487.4-201ENST00000624969 3585 ntBASIC1.72□□□□□ -2.13
NKX3-1Q99801 AC005592.1-201ENST00000566527 1640 ntBASIC1.71□□□□□ -2.14
NKX3-1Q99801 SNORA33-201ENST00000363664 130 ntBASIC1.71□□□□□ -2.14
NKX3-1Q99801 RNU6-450P-201ENST00000364654 107 ntBASIC1.71□□□□□ -2.14
NKX3-1Q99801 RNA5SP465-201ENST00000391195 109 ntBASIC1.71□□□□□ -2.14
NKX3-1Q99801 AL117342.1-201ENST00000404861 406 ntBASIC1.71□□□□□ -2.14
NKX3-1Q99801 RNU2-40P-201ENST00000410833 196 ntBASIC1.71□□□□□ -2.14
NKX3-1Q99801 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.71□□□□□ -2.14
NKX3-1Q99801 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.71□□□□□ -2.14
NKX3-1Q99801 AC074133.1-201ENST00000515696 183 ntBASIC1.71□□□□□ -2.14
NKX3-1Q99801 SNORA25.10-201ENST00000515926 124 ntBASIC1.71□□□□□ -2.14
NKX3-1Q99801 RNU6-966P-201ENST00000516479 104 ntBASIC1.71□□□□□ -2.14
NKX3-1Q99801 SNORA40.14-201ENST00000516543 86 ntBASIC1.71□□□□□ -2.14
NKX3-1Q99801 RNU6-1137P-201ENST00000517073 99 ntBASIC1.71□□□□□ -2.14
NKX3-1Q99801 CYCSP23-201ENST00000519781 313 ntBASIC1.71□□□□□ -2.14
NKX3-1Q99801 AC040926.1-201ENST00000530195 238 ntBASIC1.71□□□□□ -2.14
NKX3-1Q99801 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.71□□□□□ -2.14
NKX3-1Q99801 AC005034.5-201ENST00000604219 466 ntBASIC1.71□□□□□ -2.14
NKX3-1Q99801 AL021879.1-201ENST00000611756 288 ntBASIC1.71□□□□□ -2.14
NKX3-1Q99801 MIR7843-201ENST00000622274 79 ntBASIC1.71□□□□□ -2.14
NKX3-1Q99801 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.71□□□□□ -2.14
NKX3-1Q99801 RNU6-626P-201ENST00000363354 107 ntBASIC1.7□□□□□ -2.14
NKX3-1Q99801 Y_RNA.287-201ENST00000364853 94 ntBASIC1.7□□□□□ -2.14
NKX3-1Q99801 RNU6-1227P-201ENST00000383981 107 ntBASIC1.7□□□□□ -2.14
NKX3-1Q99801 Y_RNA.458-201ENST00000384240 102 ntBASIC1.7□□□□□ -2.14
NKX3-1Q99801 AC005534.2-201ENST00000431047 433 ntBASIC1.7□□□□□ -2.14
NKX3-1Q99801 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.7□□□□□ -2.14
NKX3-1Q99801 HMGN2P34-201ENST00000437647 269 ntBASIC1.7□□□□□ -2.14
NKX3-1Q99801 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.7□□□□□ -2.14
NKX3-1Q99801 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.7□□□□□ -2.14
NKX3-1Q99801 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.7□□□□□ -2.14
NKX3-1Q99801 UBL5P3-201ENST00000475112 231 ntBASIC1.7□□□□□ -2.14
NKX3-1Q99801 RNU2-34P-201ENST00000516534 121 ntBASIC1.7□□□□□ -2.14
NKX3-1Q99801 AC027419.1-201ENST00000522976 328 ntBASIC1.7□□□□□ -2.14
NKX3-1Q99801 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.7□□□□□ -2.14
NKX3-1Q99801 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.7□□□□□ -2.14
NKX3-1Q99801 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.7□□□□□ -2.14
NKX3-1Q99801 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.7□□□□□ -2.14
NKX3-1Q99801 MIR4287-201ENST00000579398 78 ntBASIC1.7□□□□□ -2.14
NKX3-1Q99801 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.7□□□□□ -2.14
NKX3-1Q99801 MIR338-201ENST00000636369 67 ntBASIC1.7□□□□□ -2.14
NKX3-1Q99801 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
NKX3-1Q99801 WWP1P1-201ENST00000466609 2769 ntBASIC1.7□□□□□ -2.14
NKX3-1Q99801 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.69□□□□□ -2.14
NKX3-1Q99801 Y_RNA.101-201ENST00000363154 102 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 SNORD14.1-201ENST00000365609 90 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 RNU6-1264P-201ENST00000383891 107 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 RNU6-20P-201ENST00000384106 107 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 RNU6-417P-201ENST00000384712 107 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 MIR504-201ENST00000385065 83 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
NKX3-1Q99801 SNORD78.2-201ENST00000391076 69 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 AL079342.1-201ENST00000401460 267 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 MRPL42P3-201ENST00000401492 326 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 RNU6-130P-201ENST00000411112 103 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 MTCO3P19-201ENST00000415864 321 ntBASIC1.69□□□□□ -2.14
NKX3-1Q99801 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.69□□□□□ -2.14
NKX3-1Q99801 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.69□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 163.4 ms