Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
CCDC39Q9UFE4 Y_RNA.584-201ENST00000391090 114 ntBASIC3.65□□□□□ -1.83
CCDC39Q9UFE4 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.65□□□□□ -1.83
CCDC39Q9UFE4 AL512604.1-201ENST00000404812 257 ntBASIC3.65□□□□□ -1.83
CCDC39Q9UFE4 RNA5SP229-201ENST00000410809 99 ntBASIC3.65□□□□□ -1.83
CCDC39Q9UFE4 RPL26P9-201ENST00000457466 433 ntBASIC3.65□□□□□ -1.83
CCDC39Q9UFE4 RPL31P41-201ENST00000477967 372 ntBASIC3.65□□□□□ -1.83
CCDC39Q9UFE4 RN7SKP43-201ENST00000516173 320 ntBASIC3.65□□□□□ -1.83
CCDC39Q9UFE4 SNORD59.2-201ENST00000516873 68 ntBASIC3.65□□□□□ -1.83
CCDC39Q9UFE4 CKS1BP7-201ENST00000522230 235 ntBASIC3.65□□□□□ -1.83
CCDC39Q9UFE4 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC39Q9UFE4 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC39Q9UFE4 AC006199.1-201ENST00000548728 219 ntBASIC3.65□□□□□ -1.83
CCDC39Q9UFE4 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
CCDC39Q9UFE4 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC39Q9UFE4 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC39Q9UFE4 MIR450A1-201ENST00000362262 91 ntBASIC3.64□□□□□ -1.83
CCDC39Q9UFE4 Y_RNA.310-201ENST00000365063 113 ntBASIC3.64□□□□□ -1.83
CCDC39Q9UFE4 Y_RNA.341-201ENST00000365341 102 ntBASIC3.64□□□□□ -1.83
CCDC39Q9UFE4 RNU1-73P-201ENST00000383971 164 ntBASIC3.64□□□□□ -1.83
CCDC39Q9UFE4 RNU1-101P-201ENST00000391171 127 ntBASIC3.64□□□□□ -1.83
CCDC39Q9UFE4 MIR320B2-201ENST00000408479 138 ntBASIC3.64□□□□□ -1.83
CCDC39Q9UFE4 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.64□□□□□ -1.83
CCDC39Q9UFE4 RNU6-855P-201ENST00000410395 104 ntBASIC3.64□□□□□ -1.83
CCDC39Q9UFE4 RNU4-43P-201ENST00000410628 137 ntBASIC3.64□□□□□ -1.83
CCDC39Q9UFE4 AC019205.3-201ENST00000424573 156 ntBASIC3.64□□□□□ -1.83
CCDC39Q9UFE4 AL158147.1-201ENST00000443970 75 ntBASIC3.64□□□□□ -1.83
CCDC39Q9UFE4 RPS29P24-201ENST00000486345 171 ntBASIC3.64□□□□□ -1.83
CCDC39Q9UFE4 AC090142.3-201ENST00000519012 385 ntBASIC3.64□□□□□ -1.83
CCDC39Q9UFE4 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC39Q9UFE4 AC133485.4-201ENST00000561835 220 ntBASIC3.64□□□□□ -1.83
CCDC39Q9UFE4 AC138907.4-201ENST00000570107 226 ntBASIC3.64□□□□□ -1.83
CCDC39Q9UFE4 MIR4724-201ENST00000579485 89 ntBASIC3.64□□□□□ -1.83
CCDC39Q9UFE4 FTX_3.1-201ENST00000610451 147 ntBASIC3.64□□□□□ -1.83
CCDC39Q9UFE4 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC39Q9UFE4 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC39Q9UFE4 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC39Q9UFE4 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC39Q9UFE4 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
CCDC39Q9UFE4 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC39Q9UFE4 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC39Q9UFE4 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.63□□□□□ -1.83
CCDC39Q9UFE4 SNORD73B-201ENST00000364394 72 ntBASIC3.63□□□□□ -1.83
CCDC39Q9UFE4 RNU6-1164P-201ENST00000364428 107 ntBASIC3.63□□□□□ -1.83
CCDC39Q9UFE4 RNU6-597P-201ENST00000365620 102 ntBASIC3.63□□□□□ -1.83
CCDC39Q9UFE4 Y_RNA.456-201ENST00000384232 111 ntBASIC3.63□□□□□ -1.83
CCDC39Q9UFE4 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC39Q9UFE4 AL353705.1-201ENST00000433468 480 ntBASIC3.63□□□□□ -1.83
CCDC39Q9UFE4 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC39Q9UFE4 AC090525.1-201ENST00000479116 478 ntBASIC3.63□□□□□ -1.83
CCDC39Q9UFE4 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.63□□□□□ -1.83
CCDC39Q9UFE4 Y_RNA.677-201ENST00000516401 85 ntBASIC3.63□□□□□ -1.83
CCDC39Q9UFE4 AC120024.3-201ENST00000603167 156 ntBASIC3.63□□□□□ -1.83
CCDC39Q9UFE4 SNRPGP20-201ENST00000604477 205 ntBASIC3.63□□□□□ -1.83
CCDC39Q9UFE4 AC019176.2-201ENST00000611579 315 ntBASIC3.63□□□□□ -1.83
CCDC39Q9UFE4 ADAM3A-203ENST00000461344 2157 ntBASIC3.63□□□□□ -1.83
CCDC39Q9UFE4 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC39Q9UFE4 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC39Q9UFE4 AC108206.1-201ENST00000570186 4159 ntBASIC3.62□□□□□ -1.83
CCDC39Q9UFE4 AC022336.2-201ENST00000568966 2538 ntBASIC3.62□□□□□ -1.83
CCDC39Q9UFE4 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.62□□□□□ -1.83
CCDC39Q9UFE4 Y_RNA.243-201ENST00000364481 109 ntBASIC3.62□□□□□ -1.83
CCDC39Q9UFE4 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC39Q9UFE4 MIR548A3-201ENST00000385297 97 ntBASIC3.62□□□□□ -1.83
CCDC39Q9UFE4 AC008155.2-201ENST00000464337 397 ntBASIC3.62□□□□□ -1.83
CCDC39Q9UFE4 AC103975.1-201ENST00000482506 483 ntBASIC3.62□□□□□ -1.83
CCDC39Q9UFE4 Y_RNA.692-201ENST00000516627 105 ntBASIC3.62□□□□□ -1.83
CCDC39Q9UFE4 RNU6-537P-201ENST00000517277 103 ntBASIC3.62□□□□□ -1.83
CCDC39Q9UFE4 CYP4A27P-201ENST00000567218 190 ntBASIC3.62□□□□□ -1.83
CCDC39Q9UFE4 AC008739.3-201ENST00000603262 127 ntBASIC3.62□□□□□ -1.83
CCDC39Q9UFE4 AC004832.5-201ENST00000608677 401 ntBASIC3.62□□□□□ -1.83
CCDC39Q9UFE4 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.62□□□□□ -1.83
CCDC39Q9UFE4 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.62□□□□□ -1.83
CCDC39Q9UFE4 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
CCDC39Q9UFE4 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.62□□□□□ -1.83
CCDC39Q9UFE4 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 MIR367-201ENST00000362299 68 ntBASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 U8.1-201ENST00000362843 134 ntBASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 Y_RNA.116-201ENST00000363292 103 ntBASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 RNU6-144P-201ENST00000383951 107 ntBASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 U3.26-201ENST00000391236 204 ntBASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 MIR208B-201ENST00000401172 77 ntBASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 HMGN2P30-201ENST00000423237 256 ntBASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 RPL37P4-201ENST00000448908 268 ntBASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 AL031737.1-201ENST00000450125 223 ntBASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 AL031183.1-201ENST00000457667 207 ntBASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 RNU6-1061P-201ENST00000516530 99 ntBASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 RNU6-928P-201ENST00000516876 104 ntBASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 AP000867.2-201ENST00000532468 320 ntBASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 AC011471.1-201ENST00000585766 187 ntBASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 AL031274.2-201ENST00000599419 203 ntBASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 UGP2-230ENST00000626380 276 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 169.9 ms