Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RPL17P51-201ENST00000605218 238 ntBASIC1.85□□□□□ -2.11
NKX3-1Q99801 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC1.85□□□□□ -2.11
NKX3-1Q99801 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
NKX3-1Q99801 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC1.85□□□□□ -2.11
NKX3-1Q99801 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
NKX3-1Q99801 RNU6-879P-201ENST00000364328 108 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 RNU4-42P-201ENST00000364738 142 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 RNA5SP138-201ENST00000365098 114 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 Y_RNA.431-201ENST00000384086 102 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 Y_RNA.460-201ENST00000384255 102 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 SNORD14D-201ENST00000384390 87 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 RNU6-1026P-201ENST00000384465 108 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 MIR625-201ENST00000385047 85 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 SNORA69.1-201ENST00000390904 137 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 SNORA48.3-201ENST00000391081 134 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 HMGN2P39-201ENST00000398005 273 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 MIR1283-1-201ENST00000408494 87 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.84□□□□□ -2.11
NKX3-1Q99801 AC114482.1-201ENST00000418010 247 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 AC123900.1-201ENST00000420390 96 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 DPH3P2-201ENST00000422618 250 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 BX510359.4-201ENST00000423750 193 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 AC139712.2-201ENST00000424302 339 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 AL137792.2-201ENST00000443484 235 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 Y_RNA.639-201ENST00000458981 102 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 RNU1-40P-201ENST00000516816 164 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 RNA5SP137-201ENST00000516833 135 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 RNU1-97P-201ENST00000516872 164 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 SNORD116.3-201ENST00000517176 78 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.84□□□□□ -2.11
NKX3-1Q99801 AC026271.5-201ENST00000577873 130 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 AC092447.9-201ENST00000603395 144 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 AC010999.1-201ENST00000611856 324 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 AC007485.1-201ENST00000616755 206 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 AL590240.4-201ENST00000616908 390 ntBASIC1.84□□□□□ -2.11
NKX3-1Q99801 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.11
NKX3-1Q99801 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
NKX3-1Q99801 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
NKX3-1Q99801 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
NKX3-1Q99801 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.83□□□□□ -2.12
NKX3-1Q99801 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
NKX3-1Q99801 RNU1-62P-201ENST00000362599 164 ntBASIC1.83□□□□□ -2.12
NKX3-1Q99801 Y_RNA.179-201ENST00000363844 90 ntBASIC1.83□□□□□ -2.12
NKX3-1Q99801 RNU6-280P-201ENST00000364145 104 ntBASIC1.83□□□□□ -2.12
NKX3-1Q99801 Y_RNA.252-201ENST00000364556 101 ntBASIC1.83□□□□□ -2.12
NKX3-1Q99801 Y_RNA.395-201ENST00000383945 109 ntBASIC1.83□□□□□ -2.12
NKX3-1Q99801 Y_RNA.428-201ENST00000384078 102 ntBASIC1.83□□□□□ -2.12
NKX3-1Q99801 RNU6-793P-201ENST00000384233 104 ntBASIC1.83□□□□□ -2.12
NKX3-1Q99801 Y_RNA.605-201ENST00000410577 105 ntBASIC1.83□□□□□ -2.12
NKX3-1Q99801 RNA5SP270-201ENST00000411361 118 ntBASIC1.83□□□□□ -2.12
NKX3-1Q99801 AL356379.1-201ENST00000414105 126 ntBASIC1.83□□□□□ -2.12
NKX3-1Q99801 AC018865.2-201ENST00000423631 129 ntBASIC1.83□□□□□ -2.12
NKX3-1Q99801 MTCO1P44-201ENST00000441935 243 ntBASIC1.83□□□□□ -2.12
NKX3-1Q99801 RNA5SP233-201ENST00000459153 113 ntBASIC1.83□□□□□ -2.12
NKX3-1Q99801 AC010531.2-201ENST00000465012 153 ntBASIC1.83□□□□□ -2.12
NKX3-1Q99801 HMGN2P9-201ENST00000476875 229 ntBASIC1.83□□□□□ -2.12
NKX3-1Q99801 RNU6-344P-201ENST00000516635 111 ntBASIC1.83□□□□□ -2.12
NKX3-1Q99801 SNORA31.25-201ENST00000517242 134 ntBASIC1.83□□□□□ -2.12
NKX3-1Q99801 AC087441.2-201ENST00000529141 262 ntBASIC1.83□□□□□ -2.12
NKX3-1Q99801 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.83□□□□□ -2.12
NKX3-1Q99801 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC1.83□□□□□ -2.12
NKX3-1Q99801 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.83□□□□□ -2.12
NKX3-1Q99801 AC090971.5-201ENST00000621102 293 ntBASIC1.83□□□□□ -2.12
NKX3-1Q99801 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
NKX3-1Q99801 MTND5P35-201ENST00000557537 1720 ntBASIC1.83□□□□□ -2.12
NKX3-1Q99801 MTND4P1-201ENST00000457501 1466 ntBASIC1.82□□□□□ -2.12
NKX3-1Q99801 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC1.82□□□□□ -2.12
NKX3-1Q99801 RNU6-1301P-201ENST00000362724 104 ntBASIC1.82□□□□□ -2.12
NKX3-1Q99801 SNORA16B-201ENST00000364674 135 ntBASIC1.82□□□□□ -2.12
NKX3-1Q99801 RNU6-1145P-201ENST00000384246 107 ntBASIC1.82□□□□□ -2.12
NKX3-1Q99801 RNY1P14-201ENST00000384426 108 ntBASIC1.82□□□□□ -2.12
NKX3-1Q99801 MIR518A2-201ENST00000384966 87 ntBASIC1.82□□□□□ -2.12
NKX3-1Q99801 MIR597-201ENST00000384968 97 ntBASIC1.82□□□□□ -2.12
NKX3-1Q99801 MIR548B-201ENST00000385247 97 ntBASIC1.82□□□□□ -2.12
NKX3-1Q99801 MIR320B2-201ENST00000408479 138 ntBASIC1.82□□□□□ -2.12
NKX3-1Q99801 PMCHL1-202ENST00000423102 261 ntBASIC1.82□□□□□ -2.12
NKX3-1Q99801 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.82□□□□□ -2.12
NKX3-1Q99801 MTND4P28-201ENST00000426217 387 ntBASIC1.82□□□□□ -2.12
NKX3-1Q99801 AL356320.1-201ENST00000429616 163 ntBASIC1.82□□□□□ -2.12
NKX3-1Q99801 AC099799.1-201ENST00000439809 192 ntBASIC1.82□□□□□ -2.12
NKX3-1Q99801 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.82□□□□□ -2.12
NKX3-1Q99801 RPS27P21-201ENST00000486977 252 ntBASIC1.82□□□□□ -2.12
NKX3-1Q99801 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.82□□□□□ -2.12
NKX3-1Q99801 RNU6-976P-201ENST00000516086 111 ntBASIC1.82□□□□□ -2.12
NKX3-1Q99801 RNA5SP200-201ENST00000516360 103 ntBASIC1.82□□□□□ -2.12
NKX3-1Q99801 RNU4-77P-201ENST00000516692 156 ntBASIC1.82□□□□□ -2.12
NKX3-1Q99801 RNU7-4P-201ENST00000516961 62 ntBASIC1.82□□□□□ -2.12
NKX3-1Q99801 AP005660.1-201ENST00000522972 293 ntBASIC1.82□□□□□ -2.12
NKX3-1Q99801 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.82□□□□□ -2.12
NKX3-1Q99801 AC002984.1-201ENST00000591692 448 ntBASIC1.82□□□□□ -2.12
NKX3-1Q99801 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.82□□□□□ -2.12
NKX3-1Q99801 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.82□□□□□ -2.12
NKX3-1Q99801 MIR6715A-201ENST00000615929 79 ntBASIC1.82□□□□□ -2.12
NKX3-1Q99801 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.82□□□□□ -2.12
NKX3-1Q99801 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.82□□□□□ -2.12
NKX3-1Q99801 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.81□□□□□ -2.12
NKX3-1Q99801 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.81□□□□□ -2.12
NKX3-1Q99801 AC008555.8-201ENST00000623602 2168 ntBASIC1.81□□□□□ -2.12
NKX3-1Q99801 Y_RNA.99-201ENST00000363138 105 ntBASIC1.81□□□□□ -2.12
NKX3-1Q99801 RNA5SP493-201ENST00000364115 91 ntBASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 169.3 ms