Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC1.88□□□□□ -2.11
NKX3-1Q99801 MIR5002-201ENST00000584713 97 ntBASIC1.88□□□□□ -2.11
NKX3-1Q99801 AC125232.2-201ENST00000592457 143 ntBASIC1.88□□□□□ -2.11
NKX3-1Q99801 AL031274.2-201ENST00000599419 203 ntBASIC1.88□□□□□ -2.11
NKX3-1Q99801 SNRPGP17-201ENST00000603780 214 ntBASIC1.88□□□□□ -2.11
NKX3-1Q99801 MZT1P2-201ENST00000604387 248 ntBASIC1.88□□□□□ -2.11
NKX3-1Q99801 SNRPGP20-201ENST00000604477 205 ntBASIC1.88□□□□□ -2.11
NKX3-1Q99801 AL080274.1-201ENST00000605565 220 ntBASIC1.88□□□□□ -2.11
NKX3-1Q99801 AC005296.1-201ENST00000616145 209 ntBASIC1.88□□□□□ -2.11
NKX3-1Q99801 AC090574.1-201ENST00000623186 233 ntBASIC1.88□□□□□ -2.11
NKX3-1Q99801 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.88□□□□□ -2.11
NKX3-1Q99801 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC1.88□□□□□ -2.11
NKX3-1Q99801 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
NKX3-1Q99801 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.87□□□□□ -2.11
NKX3-1Q99801 Y_RNA.31-201ENST00000362574 102 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 RNA5SP361-201ENST00000362686 118 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 Y_RNA.138-201ENST00000363462 102 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 Y_RNA.197-201ENST00000364004 102 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 SNORD114-6-201ENST00000364393 72 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 RNU6-1164P-201ENST00000364428 107 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 Y_RNA.314-201ENST00000365114 102 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 RNA5SP37-201ENST00000365420 130 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 SNORD42.2-201ENST00000365570 69 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 SNORA67.2-201ENST00000384300 149 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 RNU1-139P-201ENST00000391307 165 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 MIR1261-201ENST00000408659 82 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 RNA5SP425-201ENST00000410336 112 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC1.87□□□□□ -2.11
NKX3-1Q99801 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
NKX3-1Q99801 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.87□□□□□ -2.11
NKX3-1Q99801 AC010095.1-201ENST00000443543 144 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 AC009237.7-201ENST00000447357 229 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 AC091179.3-201ENST00000474761 144 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 Y_RNA.661-201ENST00000516003 99 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 RNU6-1114P-201ENST00000516022 107 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 RNU6-1198P-201ENST00000516904 67 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 AC022868.1-201ENST00000517767 391 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 AC090617.3-201ENST00000573670 475 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 MIR4448-201ENST00000584360 86 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 AC078899.2-201ENST00000595282 212 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 AL359314.1-201ENST00000616913 261 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 AL160413.1-201ENST00000622780 310 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 AC138305.3-201ENST00000624988 240 ntBASIC1.87□□□□□ -2.11
NKX3-1Q99801 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
NKX3-1Q99801 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
NKX3-1Q99801 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
NKX3-1Q99801 Y_RNA.80-201ENST00000362996 102 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 RNU6-137P-201ENST00000363680 108 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 SNORD87-201ENST00000364849 89 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 SNORD31B-201ENST00000364977 69 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 Y_RNA.332-201ENST00000365271 113 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 RNU6-708P-201ENST00000384217 107 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 RNU6-474P-201ENST00000384243 107 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 RNU6-318P-201ENST00000384283 103 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 Y_RNA.485-201ENST00000384395 102 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 AL033519.2-201ENST00000403958 392 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 AL357139.1-201ENST00000407792 426 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 SNORA3.2-201ENST00000408221 125 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 RN7SKP284-201ENST00000411002 343 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 RNU6-1001P-201ENST00000411265 100 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 SRIP3-201ENST00000413200 219 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.86□□□□□ -2.11
NKX3-1Q99801 AC096638.1-201ENST00000444678 216 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.86□□□□□ -2.11
NKX3-1Q99801 AL021397.1-201ENST00000451806 248 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 HMGN1P13-201ENST00000505795 138 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 RNU1-117P-201ENST00000517041 158 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.86□□□□□ -2.11
NKX3-1Q99801 AC093023.1-201ENST00000547375 507 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 AK6P2-201ENST00000549020 471 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.86□□□□□ -2.11
NKX3-1Q99801 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 AL357075.2-201ENST00000614906 189 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 AC009831.4-201ENST00000620744 325 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 MIR6132-201ENST00000622083 109 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 uc_338.22-201ENST00000622722 187 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 AC091925.1-201ENST00000623204 462 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 ZNF658B-202ENST00000615961 3375 ntBASIC1.86□□□□□ -2.11
NKX3-1Q99801 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
NKX3-1Q99801 AC073544.1-201ENST00000600110 1595 ntBASIC1.85□□□□□ -2.11
NKX3-1Q99801 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.85□□□□□ -2.11
NKX3-1Q99801 MTND5P6-201ENST00000422338 1798 ntBASIC1.85□□□□□ -2.11
NKX3-1Q99801 Y_RNA.132-201ENST00000363421 102 ntBASIC1.85□□□□□ -2.11
NKX3-1Q99801 RNU6-1305P-201ENST00000364353 104 ntBASIC1.85□□□□□ -2.11
NKX3-1Q99801 RNU6-438P-201ENST00000365561 103 ntBASIC1.85□□□□□ -2.11
NKX3-1Q99801 Y_RNA.415-201ENST00000384012 112 ntBASIC1.85□□□□□ -2.11
NKX3-1Q99801 RNU6-245P-201ENST00000384020 107 ntBASIC1.85□□□□□ -2.11
NKX3-1Q99801 RNU6-418P-201ENST00000384035 107 ntBASIC1.85□□□□□ -2.11
NKX3-1Q99801 MIR329-1-201ENST00000385028 80 ntBASIC1.85□□□□□ -2.11
NKX3-1Q99801 Y_RNA.592-201ENST00000410274 109 ntBASIC1.85□□□□□ -2.11
NKX3-1Q99801 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
NKX3-1Q99801 AC016717.1-201ENST00000448918 286 ntBASIC1.85□□□□□ -2.11
NKX3-1Q99801 AC016925.1-201ENST00000458303 298 ntBASIC1.85□□□□□ -2.11
NKX3-1Q99801 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.85□□□□□ -2.11
NKX3-1Q99801 RNU6-1170P-201ENST00000515974 106 ntBASIC1.85□□□□□ -2.11
NKX3-1Q99801 RNU6-1153P-201ENST00000516760 105 ntBASIC1.85□□□□□ -2.11
NKX3-1Q99801 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.85□□□□□ -2.11
NKX3-1Q99801 MIR3945-201ENST00000581853 98 ntBASIC1.85□□□□□ -2.11
NKX3-1Q99801 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.85□□□□□ -2.11
NKX3-1Q99801 SNRPGP19-201ENST00000603826 189 ntBASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 176.9 ms