Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 RNU6-381P-201ENST00000391259 108 ntBASIC3.21□□□□□ -1.9
PTCHD1Q96NR3 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.21□□□□□ -1.9
PTCHD1Q96NR3 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.21□□□□□ -1.9
PTCHD1Q96NR3 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.21□□□□□ -1.9
PTCHD1Q96NR3 RMST_8.1-201ENST00000610287 165 ntBASIC3.21□□□□□ -1.9
PTCHD1Q96NR3 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
PTCHD1Q96NR3 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.21□□□□□ -1.9
PTCHD1Q96NR3 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.21□□□□□ -1.9
PTCHD1Q96NR3 PWAR6-201ENST00000552334 4618 ntBASIC3.21□□□□□ -1.9
PTCHD1Q96NR3 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 Y_RNA.291-201ENST00000364886 113 ntBASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 Y_RNA.293-201ENST00000364908 93 ntBASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 SNORA51.4-201ENST00000364993 124 ntBASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 Y_RNA.341-201ENST00000365341 102 ntBASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 RNU6-449P-201ENST00000383914 107 ntBASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 RNU6-1027P-201ENST00000383998 107 ntBASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 RNU6-1083P-201ENST00000384022 107 ntBASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 RN7SKP111-201ENST00000410349 271 ntBASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 BMS1P22-201ENST00000414726 313 ntBASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 SNORA70.12-201ENST00000516084 153 ntBASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 SCARNA17.1-201ENST00000516211 143 ntBASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 SCARNA17.2-201ENST00000516334 143 ntBASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 AC021269.2-201ENST00000532318 330 ntBASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 SCARNA17.4-201ENST00000614296 143 ntBASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC3.2□□□□□ -1.9
PTCHD1Q96NR3 AC091564.4-201ENST00000533934 2194 ntBASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 AL513302.2-201ENST00000562313 1842 ntBASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 RNU6-899P-201ENST00000363947 107 ntBASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 Y_RNA.357-201ENST00000365487 109 ntBASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 Y_RNA.456-201ENST00000384232 111 ntBASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 MIR34B-201ENST00000385076 84 ntBASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 MIR23A-201ENST00000385245 73 ntBASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 MIR1185-2-201ENST00000408687 86 ntBASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 SEPT7P4-201ENST00000437076 306 ntBASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 AC006539.3-201ENST00000454258 129 ntBASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 RPL23AP67-201ENST00000465341 474 ntBASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 HMGN2P9-201ENST00000476875 229 ntBASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 RPS29P2-201ENST00000479278 136 ntBASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 AC093663.1-201ENST00000497190 394 ntBASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 AC005840.1-201ENST00000498412 377 ntBASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 MRPS36P2-201ENST00000512569 299 ntBASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 Y_RNA.797-201ENST00000515977 94 ntBASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 RN7SKP164-201ENST00000516138 266 ntBASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 NDUFB9P3-201ENST00000521269 501 ntBASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 UCA1.1-201ENST00000620952 75 ntBASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 AC110079.1-202ENST00000635213 138 ntBASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 AC068700.1-201ENST00000565862 3754 ntBASIC3.19□□□□□ -1.9
PTCHD1Q96NR3 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
PTCHD1Q96NR3 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.18□□□□□ -1.9
PTCHD1Q96NR3 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PTCHD1Q96NR3 AL049781.1-201ENST00000623195 3585 ntBASIC3.18□□□□□ -1.9
PTCHD1Q96NR3 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
PTCHD1Q96NR3 RNU6-486P-201ENST00000363116 107 ntBASIC3.18□□□□□ -1.9
PTCHD1Q96NR3 SNORD46.1-201ENST00000364139 104 ntBASIC3.18□□□□□ -1.9
PTCHD1Q96NR3 RNU4-84P-201ENST00000364200 139 ntBASIC3.18□□□□□ -1.9
PTCHD1Q96NR3 RNU1-33P-201ENST00000364249 162 ntBASIC3.18□□□□□ -1.9
PTCHD1Q96NR3 RNU4-10P-201ENST00000364383 140 ntBASIC3.18□□□□□ -1.9
PTCHD1Q96NR3 Y_RNA.310-201ENST00000365063 113 ntBASIC3.18□□□□□ -1.9
PTCHD1Q96NR3 SNORA8.3-201ENST00000384679 139 ntBASIC3.18□□□□□ -1.9
PTCHD1Q96NR3 AL355497.1-201ENST00000406262 551 ntBASIC3.18□□□□□ -1.9
PTCHD1Q96NR3 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.18□□□□□ -1.9
PTCHD1Q96NR3 MIR449C-201ENST00000516047 92 ntBASIC3.18□□□□□ -1.9
PTCHD1Q96NR3 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC3.18□□□□□ -1.9
PTCHD1Q96NR3 MIR3684-201ENST00000579779 74 ntBASIC3.18□□□□□ -1.9
PTCHD1Q96NR3 MIR4425-201ENST00000580572 84 ntBASIC3.18□□□□□ -1.9
PTCHD1Q96NR3 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.18□□□□□ -1.9
PTCHD1Q96NR3 AC069294.1-201ENST00000608397 350 ntBASIC3.18□□□□□ -1.9
PTCHD1Q96NR3 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.18□□□□□ -1.9
PTCHD1Q96NR3 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.18□□□□□ -1.9
PTCHD1Q96NR3 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
PTCHD1Q96NR3 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
PTCHD1Q96NR3 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PTCHD1Q96NR3 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.17□□□□□ -1.9
PTCHD1Q96NR3 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
PTCHD1Q96NR3 MIR30E-201ENST00000362104 92 ntBASIC3.17□□□□□ -1.9
PTCHD1Q96NR3 RNU6-275P-201ENST00000364910 107 ntBASIC3.17□□□□□ -1.9
PTCHD1Q96NR3 MIR626-201ENST00000385032 94 ntBASIC3.17□□□□□ -1.9
PTCHD1Q96NR3 SNORA48.5-201ENST00000391143 135 ntBASIC3.17□□□□□ -1.9
PTCHD1Q96NR3 MIR300-201ENST00000401138 83 ntBASIC3.17□□□□□ -1.9
PTCHD1Q96NR3 MIR1294-201ENST00000408503 142 ntBASIC3.17□□□□□ -1.9
PTCHD1Q96NR3 RNU7-14P-201ENST00000459331 62 ntBASIC3.17□□□□□ -1.9
PTCHD1Q96NR3 AC008155.2-201ENST00000464337 397 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 198.3 ms