Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 HAUS6P2-201ENST00000433254 2404 ntBASIC1.67□□□□□ -2.14
HOXC4P09017 RNU6-1010P-201ENST00000362757 107 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 RNU6-227P-201ENST00000362865 103 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 Y_RNA.80-201ENST00000362996 102 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 SNORA63-201ENST00000363450 132 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 Y_RNA.148-201ENST00000363557 117 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 RNU6-99P-201ENST00000364721 107 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 SNORD32A-201ENST00000364805 84 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 RNU6-487P-201ENST00000365430 104 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 RNU6-622P-201ENST00000384272 103 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 Y_RNA.485-201ENST00000384395 102 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 MIR544A-201ENST00000384855 91 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.66□□□□□ -2.14
HOXC4P09017 RNU6-1106P-201ENST00000390845 107 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 AC138623.1-201ENST00000418060 216 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 AL591043.1-201ENST00000432461 424 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 RPL23AP50-201ENST00000434149 455 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 AL603825.1-201ENST00000438481 80 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.66□□□□□ -2.14
HOXC4P09017 CHEK2P4-201ENST00000450340 246 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.66□□□□□ -2.14
HOXC4P09017 U8.21-201ENST00000459536 136 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.66□□□□□ -2.14
HOXC4P09017 AC105758.1-201ENST00000506038 399 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.66□□□□□ -2.14
HOXC4P09017 CBX3P4-201ENST00000538909 354 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 NDUFA5P6-201ENST00000542110 379 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.66□□□□□ -2.14
HOXC4P09017 AC233702.2-202ENST00000562547 291 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 MIR5696-201ENST00000578474 85 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 BNIP3P16-201ENST00000589779 534 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 RPL30P11-203ENST00000598995 310 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 AP000942.3-201ENST00000603702 160 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 AC005034.5-201ENST00000604219 466 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 AC018889.1-201ENST00000605372 397 ntBASIC1.66□□□□□ -2.14
HOXC4P09017 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.66□□□□□ -2.14
HOXC4P09017 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.66□□□□□ -2.14
HOXC4P09017 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.14
HOXC4P09017 MTND5P9-201ENST00000503854 1755 ntBASIC1.65□□□□□ -2.14
HOXC4P09017 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
HOXC4P09017 RNU6-874P-201ENST00000362390 105 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 Y_RNA.112-201ENST00000363250 102 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 SNORA36A-201ENST00000384221 132 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 RNY1P14-201ENST00000384426 108 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 RNU6-843P-201ENST00000384454 104 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 AL591034.2-201ENST00000402839 359 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 AP000275.1-201ENST00000411943 390 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.65□□□□□ -2.15
HOXC4P09017 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.65□□□□□ -2.15
HOXC4P09017 AC096644.2-201ENST00000429278 159 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 Z82188.1-201ENST00000436709 154 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 AL353689.1-201ENST00000438895 199 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 AL035666.1-201ENST00000446195 348 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.65□□□□□ -2.15
HOXC4P09017 SNORD13-201ENST00000459299 104 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 HMGN1P10-201ENST00000474557 553 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 RPL30P1-201ENST00000488676 339 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 HMGB1P35-201ENST00000503360 598 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.65□□□□□ -2.15
HOXC4P09017 Y_RNA.661-201ENST00000516003 99 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 RN7SKP295-201ENST00000517264 153 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 RNU6-586P-201ENST00000517265 104 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.65□□□□□ -2.15
HOXC4P09017 CYP2C61P-201ENST00000604072 290 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 AL360085.1-201ENST00000604713 532 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 AC133104.2-201ENST00000615272 193 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 AC091925.1-201ENST00000623204 462 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 SNORA43.4-201ENST00000629559 138 ntBASIC1.65□□□□□ -2.15
HOXC4P09017 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.65□□□□□ -2.15
HOXC4P09017 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
HOXC4P09017 Y_RNA.28-201ENST00000362554 111 ntBASIC1.64□□□□□ -2.15
HOXC4P09017 RNU6-490P-201ENST00000362985 107 ntBASIC1.64□□□□□ -2.15
HOXC4P09017 RNY1P16-201ENST00000363063 111 ntBASIC1.64□□□□□ -2.15
HOXC4P09017 RNU6-529P-201ENST00000363383 104 ntBASIC1.64□□□□□ -2.15
HOXC4P09017 RNU6-595P-201ENST00000363944 107 ntBASIC1.64□□□□□ -2.15
HOXC4P09017 SNORA63C-201ENST00000364578 129 ntBASIC1.64□□□□□ -2.15
HOXC4P09017 U3.13-201ENST00000364804 214 ntBASIC1.64□□□□□ -2.15
HOXC4P09017 SNORD48-201ENST00000364953 64 ntBASIC1.64□□□□□ -2.15
HOXC4P09017 SNORA33.2-201ENST00000365413 134 ntBASIC1.64□□□□□ -2.15
HOXC4P09017 RNU6-784P-201ENST00000384330 106 ntBASIC1.64□□□□□ -2.15
HOXC4P09017 AL590004.1-201ENST00000405321 300 ntBASIC1.64□□□□□ -2.15
HOXC4P09017 RNA5SP494-201ENST00000410653 129 ntBASIC1.64□□□□□ -2.15
HOXC4P09017 AC113618.1-201ENST00000416747 285 ntBASIC1.64□□□□□ -2.15
HOXC4P09017 MCFD2P1-201ENST00000417812 300 ntBASIC1.64□□□□□ -2.15
HOXC4P09017 AC008267.5-201ENST00000424928 265 ntBASIC1.64□□□□□ -2.15
HOXC4P09017 MTCO3P29-201ENST00000432119 779 ntBASIC1.64□□□□□ -2.15
HOXC4P09017 MTND4P19-201ENST00000446659 478 ntBASIC1.64□□□□□ -2.15
HOXC4P09017 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.64□□□□□ -2.15
HOXC4P09017 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.64□□□□□ -2.15
HOXC4P09017 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC1.64□□□□□ -2.15
HOXC4P09017 AC018868.1-201ENST00000491307 315 ntBASIC1.64□□□□□ -2.15
HOXC4P09017 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.64□□□□□ -2.15
HOXC4P09017 RNU6-976P-201ENST00000516086 111 ntBASIC1.64□□□□□ -2.15
HOXC4P09017 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.64□□□□□ -2.15
HOXC4P09017 MIR5701-3-201ENST00000578890 82 ntBASIC1.64□□□□□ -2.15
HOXC4P09017 MIR5701-1-201ENST00000585138 82 ntBASIC1.64□□□□□ -2.15
HOXC4P09017 AC010928.2-201ENST00000588017 287 ntBASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 284.9 ms