Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MIR4474-201ENST00000579189 78 ntBASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 AC020895.1-201ENST00000595362 272 ntBASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 AC034229.5-201ENST00000624258 185 ntBASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 MIR3674-201ENST00000636576 68 ntBASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 MIR6844-201ENST00000637122 62 ntBASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 AL356274.2-201ENST00000624379 3752 ntBASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 ZNF702P-202ENST00000434269 1966 ntBASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 AC118273.1-201ENST00000525324 3006 ntBASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 Y_RNA.24-201ENST00000362508 103 ntBASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 SNORD56.1-201ENST00000362913 68 ntBASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 RNU6-324P-201ENST00000363957 106 ntBASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 SNORA62.3-201ENST00000365110 153 ntBASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 RNU6-643P-201ENST00000384018 107 ntBASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 RNU6-768P-201ENST00000384683 107 ntBASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 MIR616-201ENST00000385293 97 ntBASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 AC096649.2-201ENST00000416186 393 ntBASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 AC063976.4-201ENST00000421971 163 ntBASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 GOT2P5-201ENST00000433995 546 ntBASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 SNRPEP9-201ENST00000436794 238 ntBASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 AL121914.1-201ENST00000450188 156 ntBASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 MTATP6P7-201ENST00000453315 681 ntBASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 AC091179.3-201ENST00000474761 144 ntBASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 RNA5SP385-201ENST00000515947 110 ntBASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 LINC00933-203ENST00000559812 219 ntBASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 AC034105.4-201ENST00000568304 277 ntBASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 AC006380.1-201ENST00000603598 186 ntBASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 AC136601.2-201ENST00000604356 474 ntBASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 U3.45-201ENST00000607547 219 ntBASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 AC006111.3-201ENST00000622137 383 ntBASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 MIR3914-2-201ENST00000637339 95 ntBASIC3.78□□□□□ -1.8
CCDC39Q9UFE4 AC010329.5-201ENST00000623497 2174 ntBASIC3.78□□□□□ -1.81
CCDC39Q9UFE4 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC39Q9UFE4 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC39Q9UFE4 Y_RNA.251-201ENST00000364551 99 ntBASIC3.77□□□□□ -1.81
CCDC39Q9UFE4 RNU6-793P-201ENST00000384233 104 ntBASIC3.77□□□□□ -1.81
CCDC39Q9UFE4 MIR544A-201ENST00000384855 91 ntBASIC3.77□□□□□ -1.81
CCDC39Q9UFE4 U3.40-201ENST00000408706 208 ntBASIC3.77□□□□□ -1.81
CCDC39Q9UFE4 RNU6-588P-201ENST00000410281 105 ntBASIC3.77□□□□□ -1.81
CCDC39Q9UFE4 RNA5SP475-201ENST00000410568 110 ntBASIC3.77□□□□□ -1.81
CCDC39Q9UFE4 AC115115.1-201ENST00000449927 248 ntBASIC3.77□□□□□ -1.81
CCDC39Q9UFE4 RPL30P14-201ENST00000482744 348 ntBASIC3.77□□□□□ -1.81
CCDC39Q9UFE4 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
CCDC39Q9UFE4 Y_RNA.694-201ENST00000516677 117 ntBASIC3.77□□□□□ -1.81
CCDC39Q9UFE4 RNU6-703P-201ENST00000516946 107 ntBASIC3.77□□□□□ -1.81
CCDC39Q9UFE4 RNU2-12P-201ENST00000517216 168 ntBASIC3.77□□□□□ -1.81
CCDC39Q9UFE4 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC39Q9UFE4 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC39Q9UFE4 SNORA51-201ENST00000606420 132 ntBASIC3.77□□□□□ -1.81
CCDC39Q9UFE4 FAM35BP-202ENST00000497389 3337 ntBASIC3.77□□□□□ -1.81
CCDC39Q9UFE4 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC39Q9UFE4 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC39Q9UFE4 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC39Q9UFE4 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 RNU6-235P-201ENST00000362644 107 ntBASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 RNA5SP50-201ENST00000363731 107 ntBASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 SNORA25.7-201ENST00000364375 127 ntBASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 RNU6-1141P-201ENST00000364520 107 ntBASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 Y_RNA.287-201ENST00000364853 94 ntBASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 RNU6-915P-201ENST00000364943 103 ntBASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 MIR15B-201ENST00000385045 98 ntBASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 RN7SKP61-201ENST00000410642 295 ntBASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 RN7SKP123-201ENST00000410732 291 ntBASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 RPS26P42-201ENST00000413485 326 ntBASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 HMGN2P31-201ENST00000432430 273 ntBASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 UQCRHP3-201ENST00000451503 251 ntBASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 AC245047.8-201ENST00000456455 284 ntBASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 RPL30P5-201ENST00000494923 336 ntBASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 TRAV28-201ENST00000557548 323 ntBASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 MIR3922-201ENST00000585192 84 ntBASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 AC019159.1-201ENST00000605094 187 ntBASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 AL391903.3-201ENST00000612158 163 ntBASIC3.76□□□□□ -1.81
CCDC39Q9UFE4 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC39Q9UFE4 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC39Q9UFE4 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC39Q9UFE4 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.75□□□□□ -1.81
CCDC39Q9UFE4 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC39Q9UFE4 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
CCDC39Q9UFE4 RNU6-1048P-201ENST00000364054 107 ntBASIC3.75□□□□□ -1.81
CCDC39Q9UFE4 Y_RNA.294-201ENST00000364916 102 ntBASIC3.75□□□□□ -1.81
CCDC39Q9UFE4 RNU6-969P-201ENST00000383900 105 ntBASIC3.75□□□□□ -1.81
CCDC39Q9UFE4 SNORA46-201ENST00000384762 135 ntBASIC3.75□□□□□ -1.81
CCDC39Q9UFE4 MIR549A-201ENST00000385268 96 ntBASIC3.75□□□□□ -1.81
CCDC39Q9UFE4 SNORA40.5-201ENST00000391061 128 ntBASIC3.75□□□□□ -1.81
CCDC39Q9UFE4 AC074117.2-201ENST00000417130 397 ntBASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 174.5 ms