Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AL445567.1-201ENST00000439121 144 ntBASIC0.87□□□□□ -2.27
SHANK3Q9BYB0 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC0.87□□□□□ -2.27
SHANK3Q9BYB0 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC0.87□□□□□ -2.27
SHANK3Q9BYB0 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.87□□□□□ -2.27
SHANK3Q9BYB0 MTND4P7-201ENST00000523876 130 ntBASIC0.87□□□□□ -2.27
SHANK3Q9BYB0 AC103996.1-201ENST00000555468 102 ntBASIC0.87□□□□□ -2.27
SHANK3Q9BYB0 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC0.87□□□□□ -2.27
SHANK3Q9BYB0 AC078795.3-201ENST00000602913 472 ntBASIC0.87□□□□□ -2.27
SHANK3Q9BYB0 AP001836.1-201ENST00000604675 523 ntBASIC0.87□□□□□ -2.27
SHANK3Q9BYB0 AC069114.2-201ENST00000604699 304 ntBASIC0.87□□□□□ -2.27
SHANK3Q9BYB0 AC097372.5-201ENST00000623665 376 ntBASIC0.87□□□□□ -2.27
SHANK3Q9BYB0 Y_RNA.159-201ENST00000363674 87 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 SNORA72.2-201ENST00000365028 127 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 MIR300-201ENST00000401138 83 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 MTND1P27-201ENST00000451117 902 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 RNA5SP481-201ENST00000516814 122 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 AL137161.1-201ENST00000532231 390 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 MDM2-232ENST00000544561 213 ntTSL 5 BASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 MIR3913-1-201ENST00000577744 102 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 AC110760.3-201ENST00000598794 467 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 AC068790.2-201ENST00000602601 557 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 AC008536.2-201ENST00000607284 349 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 TCL6_2.1-201ENST00000615162 119 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 AL450472.1-202ENST00000637286 180 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 AC010615.1-201ENST00000594254 1764 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 SNORA16.2-201ENST00000390991 127 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 MTATP6P18-201ENST00000417994 673 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 AL117339.3-201ENST00000418733 162 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 AC012306.1-201ENST00000423267 114 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 MTND4P32-201ENST00000437189 1237 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 RPS27AP8-201ENST00000452665 445 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 AL356010.1-201ENST00000456364 102 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 U8.21-201ENST00000459536 136 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 KRTAP13-6P-201ENST00000508999 371 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 AC010493.1-201ENST00000513479 292 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 RNU6-229P-201ENST00000516614 102 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 HMGB1P33-201ENST00000563485 527 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 SNORA77B-201ENST00000578179 125 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 AP001596.2-201ENST00000608410 312 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 AL353149.1-201ENST00000610667 244 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 AC023510.2-201ENST00000622162 746 ntBASIC0.86□□□□□ -2.27
SHANK3Q9BYB0 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
SHANK3Q9BYB0 RNU6-552P-201ENST00000362869 119 ntBASIC0.85□□□□□ -2.27
SHANK3Q9BYB0 RNU6-271P-201ENST00000363858 105 ntBASIC0.85□□□□□ -2.27
SHANK3Q9BYB0 RNU6-827P-201ENST00000365553 106 ntBASIC0.85□□□□□ -2.27
SHANK3Q9BYB0 MIR618-201ENST00000385287 98 ntBASIC0.85□□□□□ -2.27
SHANK3Q9BYB0 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
SHANK3Q9BYB0 RNU2-70P-201ENST00000410718 179 ntBASIC0.85□□□□□ -2.27
SHANK3Q9BYB0 MTCO2P11-201ENST00000431069 680 ntBASIC0.85□□□□□ -2.27
SHANK3Q9BYB0 SNRPEP8-201ENST00000442866 260 ntBASIC0.85□□□□□ -2.27
SHANK3Q9BYB0 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC0.85□□□□□ -2.27
SHANK3Q9BYB0 RNU7-167P-201ENST00000459160 62 ntBASIC0.85□□□□□ -2.27
SHANK3Q9BYB0 MTND3P7-201ENST00000474435 343 ntBASIC0.85□□□□□ -2.27
SHANK3Q9BYB0 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC0.85□□□□□ -2.27
SHANK3Q9BYB0 RNU2-34P-201ENST00000516534 121 ntBASIC0.85□□□□□ -2.27
SHANK3Q9BYB0 SNORD60.2-201ENST00000516883 86 ntBASIC0.85□□□□□ -2.27
SHANK3Q9BYB0 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.85□□□□□ -2.27
SHANK3Q9BYB0 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC0.85□□□□□ -2.27
SHANK3Q9BYB0 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC0.85□□□□□ -2.27
SHANK3Q9BYB0 AC025449.1-201ENST00000603896 529 ntBASIC0.85□□□□□ -2.27
SHANK3Q9BYB0 MESTIT1_1.1-201ENST00000618871 140 ntBASIC0.85□□□□□ -2.27
SHANK3Q9BYB0 AC136475.10-201ENST00000620253 385 ntBASIC0.85□□□□□ -2.27
SHANK3Q9BYB0 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.85□□□□□ -2.27
SHANK3Q9BYB0 RNU6-266P-201ENST00000364225 107 ntBASIC0.84□□□□□ -2.27
SHANK3Q9BYB0 MIR194-1-201ENST00000384892 85 ntBASIC0.84□□□□□ -2.27
SHANK3Q9BYB0 MIR329-2-201ENST00000385029 84 ntBASIC0.84□□□□□ -2.27
SHANK3Q9BYB0 SNORA12.2-201ENST00000391040 156 ntBASIC0.84□□□□□ -2.27
SHANK3Q9BYB0 HSPE1P9-201ENST00000440046 311 ntBASIC0.84□□□□□ -2.27
SHANK3Q9BYB0 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.84□□□□□ -2.27
SHANK3Q9BYB0 AC103851.1-201ENST00000506833 274 ntBASIC0.84□□□□□ -2.27
SHANK3Q9BYB0 RNU6-948P-201ENST00000516374 107 ntBASIC0.84□□□□□ -2.27
SHANK3Q9BYB0 SNORA62.5-201ENST00000516634 120 ntBASIC0.84□□□□□ -2.27
SHANK3Q9BYB0 FGF7P1-201ENST00000582820 288 ntBASIC0.84□□□□□ -2.27
SHANK3Q9BYB0 AC040904.1-201ENST00000590850 223 ntBASIC0.84□□□□□ -2.27
SHANK3Q9BYB0 Z98751.3-201ENST00000604447 521 ntBASIC0.84□□□□□ -2.27
SHANK3Q9BYB0 SNRPGP20-201ENST00000604477 205 ntBASIC0.84□□□□□ -2.27
SHANK3Q9BYB0 AC002044.1-201ENST00000606707 158 ntBASIC0.84□□□□□ -2.27
SHANK3Q9BYB0 AC137590.2-201ENST00000619709 240 ntBASIC0.84□□□□□ -2.27
SHANK3Q9BYB0 SNORA63D-201ENST00000364359 132 ntBASIC0.84□□□□□ -2.28
SHANK3Q9BYB0 RNU6-1026P-201ENST00000384465 108 ntBASIC0.84□□□□□ -2.28
SHANK3Q9BYB0 RNU6-296P-201ENST00000384608 107 ntBASIC0.84□□□□□ -2.28
SHANK3Q9BYB0 SNORA26.8-201ENST00000391306 124 ntBASIC0.84□□□□□ -2.28
SHANK3Q9BYB0 RNU6-248P-201ENST00000410720 107 ntBASIC0.84□□□□□ -2.28
SHANK3Q9BYB0 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC0.84□□□□□ -2.28
SHANK3Q9BYB0 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.84□□□□□ -2.28
SHANK3Q9BYB0 snoU13.27-201ENST00000459278 104 ntBASIC0.84□□□□□ -2.28
SHANK3Q9BYB0 RPS26P55-201ENST00000471178 356 ntBASIC0.84□□□□□ -2.28
SHANK3Q9BYB0 RPL30P7-201ENST00000479312 323 ntBASIC0.84□□□□□ -2.28
SHANK3Q9BYB0 AC010486.2-201ENST00000505572 483 ntBASIC0.84□□□□□ -2.28
SHANK3Q9BYB0 SNORA14.1-201ENST00000516113 141 ntBASIC0.84□□□□□ -2.28
SHANK3Q9BYB0 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC0.84□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 187.5 ms