Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 AC012308.1-201ENST00000451232 178 ntBASIC3.16□□□□□ -1.9
KRT40Q6A162 UBL5P3-201ENST00000475112 231 ntBASIC3.16□□□□□ -1.9
KRT40Q6A162 SNORA40.9-201ENST00000515895 93 ntBASIC3.16□□□□□ -1.9
KRT40Q6A162 RNU5F-2P-201ENST00000516066 82 ntBASIC3.16□□□□□ -1.9
KRT40Q6A162 AC055872.1-201ENST00000570978 278 ntBASIC3.16□□□□□ -1.9
KRT40Q6A162 RPS15AP11-201ENST00000594193 385 ntBASIC3.16□□□□□ -1.9
KRT40Q6A162 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.16□□□□□ -1.9
KRT40Q6A162 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC3.16□□□□□ -1.9
KRT40Q6A162 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
KRT40Q6A162 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.16□□□□□ -1.9
KRT40Q6A162 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.15□□□□□ -1.91
KRT40Q6A162 RNU4-90P-201ENST00000362773 141 ntBASIC3.15□□□□□ -1.91
KRT40Q6A162 RNU6-20P-201ENST00000384106 107 ntBASIC3.15□□□□□ -1.91
KRT40Q6A162 AL512633.1-201ENST00000399931 655 ntBASIC3.15□□□□□ -1.91
KRT40Q6A162 AL138827.1-201ENST00000402666 306 ntBASIC3.15□□□□□ -1.91
KRT40Q6A162 AL139156.1-201ENST00000412785 841 ntBASIC3.15□□□□□ -1.91
KRT40Q6A162 AL365496.1-201ENST00000426885 215 ntBASIC3.15□□□□□ -1.91
KRT40Q6A162 SUMO1P3-201ENST00000439961 304 ntBASIC3.15□□□□□ -1.91
KRT40Q6A162 snoU13.26-201ENST00000459452 105 ntBASIC3.15□□□□□ -1.91
KRT40Q6A162 GZMAP1-201ENST00000503054 631 ntBASIC3.15□□□□□ -1.91
KRT40Q6A162 RNU6-966P-201ENST00000516479 104 ntBASIC3.15□□□□□ -1.91
KRT40Q6A162 AK6P2-201ENST00000549020 471 ntBASIC3.15□□□□□ -1.91
KRT40Q6A162 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC3.15□□□□□ -1.91
KRT40Q6A162 AL138963.2-201ENST00000605137 226 ntBASIC3.15□□□□□ -1.91
KRT40Q6A162 AL590808.1-201ENST00000618696 141 ntBASIC3.15□□□□□ -1.91
KRT40Q6A162 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC3.15□□□□□ -1.91
KRT40Q6A162 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.15□□□□□ -1.91
KRT40Q6A162 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.15□□□□□ -1.91
KRT40Q6A162 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.15□□□□□ -1.91
KRT40Q6A162 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
KRT40Q6A162 RNU6-626P-201ENST00000363354 107 ntBASIC3.14□□□□□ -1.91
KRT40Q6A162 Y_RNA.446-201ENST00000384178 104 ntBASIC3.14□□□□□ -1.91
KRT40Q6A162 Y_RNA.785-201ENST00000384290 109 ntBASIC3.14□□□□□ -1.91
KRT40Q6A162 MIR504-201ENST00000385065 83 ntBASIC3.14□□□□□ -1.91
KRT40Q6A162 RNU6-750P-201ENST00000390946 107 ntBASIC3.14□□□□□ -1.91
KRT40Q6A162 AIMP1P2-201ENST00000425294 312 ntBASIC3.14□□□□□ -1.91
KRT40Q6A162 MTND5P15-201ENST00000434246 349 ntBASIC3.14□□□□□ -1.91
KRT40Q6A162 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC3.14□□□□□ -1.91
KRT40Q6A162 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.14□□□□□ -1.91
KRT40Q6A162 AC007215.1-201ENST00000464893 276 ntBASIC3.14□□□□□ -1.91
KRT40Q6A162 AC107626.1-201ENST00000471084 183 ntBASIC3.14□□□□□ -1.91
KRT40Q6A162 RN7SL297P-201ENST00000483161 293 ntBASIC3.14□□□□□ -1.91
KRT40Q6A162 AIG1P1-201ENST00000503376 148 ntBASIC3.14□□□□□ -1.91
KRT40Q6A162 SNORA31.26-201ENST00000517250 137 ntBASIC3.14□□□□□ -1.91
KRT40Q6A162 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.14□□□□□ -1.91
KRT40Q6A162 RRN3P3-201ENST00000549207 578 ntBASIC3.14□□□□□ -1.91
KRT40Q6A162 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.14□□□□□ -1.91
KRT40Q6A162 MZT1P2-201ENST00000604387 248 ntBASIC3.14□□□□□ -1.91
KRT40Q6A162 BX284668.6-201ENST00000606899 438 ntBASIC3.14□□□□□ -1.91
KRT40Q6A162 SNORD113-5-201ENST00000607261 78 ntBASIC3.14□□□□□ -1.91
KRT40Q6A162 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
KRT40Q6A162 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.14□□□□□ -1.91
KRT40Q6A162 ZNF204P-201ENST00000416749 2397 ntBASIC3.14□□□□□ -1.91
KRT40Q6A162 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
KRT40Q6A162 Y_RNA.76-201ENST00000362931 109 ntBASIC3.13□□□□□ -1.91
KRT40Q6A162 RNU6-1159P-201ENST00000362933 107 ntBASIC3.13□□□□□ -1.91
KRT40Q6A162 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC3.13□□□□□ -1.91
KRT40Q6A162 AL513328.1-201ENST00000446460 224 ntBASIC3.13□□□□□ -1.91
KRT40Q6A162 RPL23AP3-201ENST00000453844 468 ntBASIC3.13□□□□□ -1.91
KRT40Q6A162 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.13□□□□□ -1.91
KRT40Q6A162 RNU4-71P-201ENST00000516258 113 ntBASIC3.13□□□□□ -1.91
KRT40Q6A162 RNU6-1198P-201ENST00000516904 67 ntBASIC3.13□□□□□ -1.91
KRT40Q6A162 RNA5SP54-201ENST00000516951 92 ntBASIC3.13□□□□□ -1.91
KRT40Q6A162 AC115990.1-201ENST00000526957 301 ntBASIC3.13□□□□□ -1.91
KRT40Q6A162 CYP4A27P-201ENST00000567218 190 ntBASIC3.13□□□□□ -1.91
KRT40Q6A162 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.13□□□□□ -1.91
KRT40Q6A162 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.13□□□□□ -1.91
KRT40Q6A162 MIR4506-201ENST00000584693 77 ntBASIC3.13□□□□□ -1.91
KRT40Q6A162 AL391813.1-201ENST00000603098 260 ntBASIC3.13□□□□□ -1.91
KRT40Q6A162 AC010999.1-201ENST00000611856 324 ntBASIC3.13□□□□□ -1.91
KRT40Q6A162 AC005520.5-201ENST00000613926 164 ntBASIC3.13□□□□□ -1.91
KRT40Q6A162 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
KRT40Q6A162 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.12□□□□□ -1.91
KRT40Q6A162 RNU6-280P-201ENST00000364145 104 ntBASIC3.12□□□□□ -1.91
KRT40Q6A162 RNA5SP201-201ENST00000410316 124 ntBASIC3.12□□□□□ -1.91
KRT40Q6A162 RN7SKP123-201ENST00000410732 291 ntBASIC3.12□□□□□ -1.91
KRT40Q6A162 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.12□□□□□ -1.91
KRT40Q6A162 snoU13.14-201ENST00000459372 104 ntBASIC3.12□□□□□ -1.91
KRT40Q6A162 AC091179.3-201ENST00000474761 144 ntBASIC3.12□□□□□ -1.91
KRT40Q6A162 RPL23AP70-201ENST00000483361 460 ntBASIC3.12□□□□□ -1.91
KRT40Q6A162 SEPT14P8-201ENST00000508026 178 ntBASIC3.12□□□□□ -1.91
KRT40Q6A162 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC3.12□□□□□ -1.91
KRT40Q6A162 SNORA25.14-201ENST00000516481 132 ntBASIC3.12□□□□□ -1.91
KRT40Q6A162 MIR3136-201ENST00000583498 78 ntBASIC3.12□□□□□ -1.91
KRT40Q6A162 RNU6-91P-201ENST00000607774 107 ntBASIC3.12□□□□□ -1.91
KRT40Q6A162 AC098479.1-201ENST00000609225 154 ntBASIC3.12□□□□□ -1.91
KRT40Q6A162 MIR6733-201ENST00000635723 61 ntBASIC3.12□□□□□ -1.91
KRT40Q6A162 AC135776.4-201ENST00000624300 1904 ntBASIC3.12□□□□□ -1.91
KRT40Q6A162 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.12□□□□□ -1.91
KRT40Q6A162 BX322639.1-202ENST00000423987 2213 ntBASIC3.12□□□□□ -1.91
KRT40Q6A162 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC3.11□□□□□ -1.91
KRT40Q6A162 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
KRT40Q6A162 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.11□□□□□ -1.91
KRT40Q6A162 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
KRT40Q6A162 RNU6-1010P-201ENST00000362757 107 ntBASIC3.11□□□□□ -1.91
KRT40Q6A162 Y_RNA.117-201ENST00000363294 101 ntBASIC3.11□□□□□ -1.91
KRT40Q6A162 RNU6-1175P-201ENST00000365200 107 ntBASIC3.11□□□□□ -1.91
KRT40Q6A162 RNU6-378P-201ENST00000384324 107 ntBASIC3.11□□□□□ -1.91
KRT40Q6A162 RNU4-70P-201ENST00000384579 139 ntBASIC3.11□□□□□ -1.91
KRT40Q6A162 CBX3P9-201ENST00000402326 552 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 180.2 ms