Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC0.94□□□□□ -2.26
SHANK3Q9BYB0 C1DP2-201ENST00000418167 426 ntBASIC0.94□□□□□ -2.26
SHANK3Q9BYB0 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC0.94□□□□□ -2.26
SHANK3Q9BYB0 AL669831.1-202ENST00000428504 417 ntBASIC0.94□□□□□ -2.26
SHANK3Q9BYB0 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC0.94□□□□□ -2.26
SHANK3Q9BYB0 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC0.94□□□□□ -2.26
SHANK3Q9BYB0 SNAP23P1-201ENST00000433229 246 ntBASIC0.94□□□□□ -2.26
SHANK3Q9BYB0 HSPE1P21-201ENST00000438283 308 ntBASIC0.94□□□□□ -2.26
SHANK3Q9BYB0 GTF2IP13-201ENST00000438487 386 ntBASIC0.94□□□□□ -2.26
SHANK3Q9BYB0 TRAPPC2P8-201ENST00000440676 396 ntBASIC0.94□□□□□ -2.26
SHANK3Q9BYB0 TRAPPC2P3-201ENST00000443200 321 ntBASIC0.94□□□□□ -2.26
SHANK3Q9BYB0 AC008628.2-201ENST00000502605 298 ntBASIC0.94□□□□□ -2.26
SHANK3Q9BYB0 SNORD27.1-201ENST00000516319 72 ntBASIC0.94□□□□□ -2.26
SHANK3Q9BYB0 SCARNA24.1-201ENST00000516465 137 ntBASIC0.94□□□□□ -2.26
SHANK3Q9BYB0 RNU6-232P-201ENST00000517144 64 ntBASIC0.94□□□□□ -2.26
SHANK3Q9BYB0 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC0.94□□□□□ -2.26
SHANK3Q9BYB0 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC0.94□□□□□ -2.26
SHANK3Q9BYB0 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 ANKRD20A17P-201ENST00000511745 1330 ntBASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 FGF7P2-201ENST00000332473 296 ntBASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 RNU6-23P-201ENST00000363283 107 ntBASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 RNU6-692P-201ENST00000384496 107 ntBASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 SNORD70.1-201ENST00000391007 85 ntBASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 RNA5SP63-201ENST00000391225 112 ntBASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 CDK8P2-201ENST00000415020 547 ntBASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 AC010975.2-201ENST00000427781 588 ntBASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 UBE2V1P8-201ENST00000437166 265 ntBASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 PRPS1P1-201ENST00000445305 876 ntBASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 SCARNA18-201ENST00000459004 134 ntBASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 AC025465.3-201ENST00000510570 311 ntBASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 RNU5F-4P-201ENST00000516581 114 ntBASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 RNU6-1220P-201ENST00000517126 108 ntBASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 AL356057.1-201ENST00000533798 831 ntBASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 AC016256.1-201ENST00000547971 354 ntBASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 EIF4A1P12-201ENST00000551910 141 ntBASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 AC093424.1-201ENST00000604999 338 ntBASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 AC004223.4-201ENST00000612426 332 ntBASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 AC022418.1-201ENST00000624118 445 ntBASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC0.93□□□□□ -2.26
SHANK3Q9BYB0 SNORD33-201ENST00000362761 85 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 SNORD32B-201ENST00000364460 84 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 SNORD32A-201ENST00000364805 84 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 Y_RNA.367-201ENST00000365544 101 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 RNU6-456P-201ENST00000384493 107 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 RNU6-1127P-201ENST00000384580 107 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 Y_RNA.549-201ENST00000384657 102 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 MIR1267-201ENST00000408723 78 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 RNU6-195P-201ENST00000411352 109 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 AC139712.2-201ENST00000424302 339 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 AC079140.2-201ENST00000506193 142 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 CARD18-203ENST00000532895 422 ntTSL 2 BASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 AC090517.1-201ENST00000569307 266 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 AL391840.1-201ENST00000571144 367 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 MIR4703-201ENST00000577728 79 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 AC012507.3-201ENST00000603556 477 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 AC064807.4-201ENST00000607201 407 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 AC005609.4-201ENST00000625071 447 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 MTND4P14-201ENST00000435799 1354 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 RNU6-112P-201ENST00000363599 104 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 RNU6-378P-201ENST00000384324 107 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 MIR597-201ENST00000384968 97 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 MT-TH-201ENST00000387441 69 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 SNORA26.3-201ENST00000391119 136 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 MTND2P4-201ENST00000445034 1004 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 MTCO2P6-201ENST00000463134 685 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 AC130509.1-201ENST00000464158 433 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 AC145146.1-201ENST00000496370 254 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 MTCO3P28-201ENST00000513351 515 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 RN7SKP287-201ENST00000516546 266 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 RNA5SP503-201ENST00000517047 117 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 ZNF321P-202ENST00000550843 495 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 AC107304.1-201ENST00000604229 296 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 AC064872.1-201ENST00000604823 1072 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 AC091931.1-201ENST00000623488 728 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 ELL2P3-201ENST00000457883 1602 ntBASIC0.92□□□□□ -2.26
SHANK3Q9BYB0 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
SHANK3Q9BYB0 U3.9-201ENST00000363823 204 ntBASIC0.91□□□□□ -2.26
SHANK3Q9BYB0 SNORD31B-201ENST00000364977 69 ntBASIC0.91□□□□□ -2.26
SHANK3Q9BYB0 Y_RNA.399-201ENST00000383955 105 ntBASIC0.91□□□□□ -2.26
SHANK3Q9BYB0 RNU6-903P-201ENST00000391270 109 ntBASIC0.91□□□□□ -2.26
SHANK3Q9BYB0 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC0.91□□□□□ -2.26
SHANK3Q9BYB0 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC0.91□□□□□ -2.26
SHANK3Q9BYB0 AC013410.2-201ENST00000422627 201 ntBASIC0.91□□□□□ -2.26
SHANK3Q9BYB0 MTCO1P44-201ENST00000441935 243 ntBASIC0.91□□□□□ -2.26
SHANK3Q9BYB0 ART2BP-201ENST00000453501 499 ntBASIC0.91□□□□□ -2.26
SHANK3Q9BYB0 snoU13.9-201ENST00000458927 103 ntBASIC0.91□□□□□ -2.26
SHANK3Q9BYB0 AC007547.1-201ENST00000462177 490 ntBASIC0.91□□□□□ -2.26
SHANK3Q9BYB0 AC117454.1-201ENST00000491120 168 ntBASIC0.91□□□□□ -2.26
SHANK3Q9BYB0 RNVU1-2-201ENST00000516326 135 ntBASIC0.91□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 215.5 ms