Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AC069114.2-201ENST00000604699 304 ntBASIC1.7□□□□□ -2.14
CCDC43Q96MW1 RMST_3.1-201ENST00000611651 109 ntBASIC1.7□□□□□ -2.14
CCDC43Q96MW1 uc_338.5-201ENST00000611839 155 ntBASIC1.7□□□□□ -2.14
CCDC43Q96MW1 AC005562.2-201ENST00000618264 111 ntBASIC1.7□□□□□ -2.14
CCDC43Q96MW1 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
CCDC43Q96MW1 AC010615.1-201ENST00000594254 1764 ntBASIC1.7□□□□□ -2.14
CCDC43Q96MW1 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
CCDC43Q96MW1 RNU1-42P-201ENST00000364033 160 ntBASIC1.69□□□□□ -2.14
CCDC43Q96MW1 RNU1-96P-201ENST00000364163 162 ntBASIC1.69□□□□□ -2.14
CCDC43Q96MW1 RNU6-1286P-201ENST00000383871 107 ntBASIC1.69□□□□□ -2.14
CCDC43Q96MW1 Y_RNA.481-201ENST00000384373 102 ntBASIC1.69□□□□□ -2.14
CCDC43Q96MW1 MIR549A-201ENST00000385268 96 ntBASIC1.69□□□□□ -2.14
CCDC43Q96MW1 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.69□□□□□ -2.14
CCDC43Q96MW1 RNU2-7P-201ENST00000410794 178 ntBASIC1.69□□□□□ -2.14
CCDC43Q96MW1 MTCO1P21-201ENST00000416634 589 ntBASIC1.69□□□□□ -2.14
CCDC43Q96MW1 ARL5AP1-201ENST00000418991 388 ntBASIC1.69□□□□□ -2.14
CCDC43Q96MW1 AC060773.1-201ENST00000421698 310 ntBASIC1.69□□□□□ -2.14
CCDC43Q96MW1 C8orf59P1-201ENST00000429930 303 ntBASIC1.69□□□□□ -2.14
CCDC43Q96MW1 AC245047.4-201ENST00000433189 144 ntBASIC1.69□□□□□ -2.14
CCDC43Q96MW1 AC004386.2-201ENST00000441858 148 ntBASIC1.69□□□□□ -2.14
CCDC43Q96MW1 AL359672.1-201ENST00000442302 409 ntBASIC1.69□□□□□ -2.14
CCDC43Q96MW1 RNU1-98P-201ENST00000458992 160 ntBASIC1.69□□□□□ -2.14
CCDC43Q96MW1 RNU6-1208P-201ENST00000459588 107 ntBASIC1.69□□□□□ -2.14
CCDC43Q96MW1 AC114801.2-201ENST00000503825 781 ntBASIC1.69□□□□□ -2.14
CCDC43Q96MW1 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC1.69□□□□□ -2.14
CCDC43Q96MW1 RNU6-970P-201ENST00000516312 107 ntBASIC1.69□□□□□ -2.14
CCDC43Q96MW1 RNU6-835P-201ENST00000516974 104 ntBASIC1.69□□□□□ -2.14
CCDC43Q96MW1 RNU1-92P-201ENST00000517017 135 ntBASIC1.69□□□□□ -2.14
CCDC43Q96MW1 MIR5006-201ENST00000583027 110 ntBASIC1.69□□□□□ -2.14
CCDC43Q96MW1 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
CCDC43Q96MW1 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
CCDC43Q96MW1 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
CCDC43Q96MW1 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.68□□□□□ -2.14
CCDC43Q96MW1 RNU6-1085P-201ENST00000363576 107 ntBASIC1.68□□□□□ -2.14
CCDC43Q96MW1 RNU6-271P-201ENST00000363858 105 ntBASIC1.68□□□□□ -2.14
CCDC43Q96MW1 RNU6-60P-201ENST00000364792 103 ntBASIC1.68□□□□□ -2.14
CCDC43Q96MW1 MIR300-201ENST00000401138 83 ntBASIC1.68□□□□□ -2.14
CCDC43Q96MW1 MIR1283-1-201ENST00000408494 87 ntBASIC1.68□□□□□ -2.14
CCDC43Q96MW1 MIR1267-201ENST00000408723 78 ntBASIC1.68□□□□□ -2.14
CCDC43Q96MW1 RNU6-325P-201ENST00000411132 105 ntBASIC1.68□□□□□ -2.14
CCDC43Q96MW1 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC1.68□□□□□ -2.14
CCDC43Q96MW1 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC1.68□□□□□ -2.14
CCDC43Q96MW1 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC1.68□□□□□ -2.14
CCDC43Q96MW1 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC1.68□□□□□ -2.14
CCDC43Q96MW1 HSPE1P24-201ENST00000450782 238 ntBASIC1.68□□□□□ -2.14
CCDC43Q96MW1 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.68□□□□□ -2.14
CCDC43Q96MW1 RPL36AP21-201ENST00000490372 323 ntBASIC1.68□□□□□ -2.14
CCDC43Q96MW1 AC067942.3-201ENST00000512025 362 ntBASIC1.68□□□□□ -2.14
CCDC43Q96MW1 RNA5SP384-201ENST00000516615 116 ntBASIC1.68□□□□□ -2.14
CCDC43Q96MW1 RNU6-405P-201ENST00000516637 110 ntBASIC1.68□□□□□ -2.14
CCDC43Q96MW1 RNU6-1332P-201ENST00000516666 104 ntBASIC1.68□□□□□ -2.14
CCDC43Q96MW1 RNU6-856P-201ENST00000516959 98 ntBASIC1.68□□□□□ -2.14
CCDC43Q96MW1 RNA5SP437-201ENST00000517249 129 ntBASIC1.68□□□□□ -2.14
CCDC43Q96MW1 AC084364.2-201ENST00000546924 395 ntBASIC1.68□□□□□ -2.14
CCDC43Q96MW1 MIR4303-201ENST00000581299 66 ntBASIC1.68□□□□□ -2.14
CCDC43Q96MW1 AP000907.4-201ENST00000604143 237 ntBASIC1.68□□□□□ -2.14
CCDC43Q96MW1 AC104458.1-201ENST00000608243 463 ntBASIC1.68□□□□□ -2.14
CCDC43Q96MW1 Z99129.1-201ENST00000612510 255 ntBASIC1.68□□□□□ -2.14
CCDC43Q96MW1 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
CCDC43Q96MW1 Y_RNA.67-201ENST00000362870 100 ntBASIC1.67□□□□□ -2.14
CCDC43Q96MW1 Y_RNA.167-201ENST00000363735 109 ntBASIC1.67□□□□□ -2.14
CCDC43Q96MW1 RNU6-1019P-201ENST00000364424 107 ntBASIC1.67□□□□□ -2.14
CCDC43Q96MW1 RNU6-259P-201ENST00000383999 107 ntBASIC1.67□□□□□ -2.14
CCDC43Q96MW1 RNU6-968P-201ENST00000384076 107 ntBASIC1.67□□□□□ -2.14
CCDC43Q96MW1 RNU6-214P-201ENST00000384130 107 ntBASIC1.67□□□□□ -2.14
CCDC43Q96MW1 RNU6-360P-201ENST00000390944 104 ntBASIC1.67□□□□□ -2.14
CCDC43Q96MW1 RNU1-78P-201ENST00000391248 165 ntBASIC1.67□□□□□ -2.14
CCDC43Q96MW1 EBAG9P1-201ENST00000418955 543 ntBASIC1.67□□□□□ -2.14
CCDC43Q96MW1 AL354695.1-201ENST00000427935 228 ntBASIC1.67□□□□□ -2.14
CCDC43Q96MW1 AC108667.1-201ENST00000428618 249 ntBASIC1.67□□□□□ -2.14
CCDC43Q96MW1 HMGN2P9-201ENST00000476875 229 ntBASIC1.67□□□□□ -2.14
CCDC43Q96MW1 RPL26P26-201ENST00000480251 434 ntBASIC1.67□□□□□ -2.14
CCDC43Q96MW1 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.67□□□□□ -2.14
CCDC43Q96MW1 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.67□□□□□ -2.14
CCDC43Q96MW1 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC1.67□□□□□ -2.14
CCDC43Q96MW1 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.67□□□□□ -2.14
CCDC43Q96MW1 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.67□□□□□ -2.14
CCDC43Q96MW1 FGF7P1-201ENST00000582820 288 ntBASIC1.67□□□□□ -2.14
CCDC43Q96MW1 MIR4753-201ENST00000585119 83 ntBASIC1.67□□□□□ -2.14
CCDC43Q96MW1 AL645939.4-201ENST00000604495 135 ntBASIC1.67□□□□□ -2.14
CCDC43Q96MW1 MIR3976-201ENST00000606807 139 ntBASIC1.67□□□□□ -2.14
CCDC43Q96MW1 TCL6_2.1-201ENST00000615162 119 ntBASIC1.67□□□□□ -2.14
CCDC43Q96MW1 AC126177.8-201ENST00000618339 1015 ntBASIC1.67□□□□□ -2.14
CCDC43Q96MW1 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.67□□□□□ -2.14
CCDC43Q96MW1 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.67□□□□□ -2.14
CCDC43Q96MW1 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.66□□□□□ -2.14
CCDC43Q96MW1 U8.10-201ENST00000384260 133 ntBASIC1.66□□□□□ -2.14
CCDC43Q96MW1 MIR521-1-201ENST00000384902 87 ntBASIC1.66□□□□□ -2.14
CCDC43Q96MW1 MIR548B-201ENST00000385247 97 ntBASIC1.66□□□□□ -2.14
CCDC43Q96MW1 SNORA17.3-201ENST00000391159 129 ntBASIC1.66□□□□□ -2.14
CCDC43Q96MW1 EIF4E2P1-201ENST00000393781 255 ntBASIC1.66□□□□□ -2.14
CCDC43Q96MW1 AL117342.1-201ENST00000404861 406 ntBASIC1.66□□□□□ -2.14
CCDC43Q96MW1 RNU6-648P-201ENST00000410190 107 ntBASIC1.66□□□□□ -2.14
CCDC43Q96MW1 RNU6-174P-201ENST00000410406 106 ntBASIC1.66□□□□□ -2.14
CCDC43Q96MW1 RNU2-66P-201ENST00000410650 161 ntBASIC1.66□□□□□ -2.14
CCDC43Q96MW1 USP9YP14-201ENST00000430663 563 ntBASIC1.66□□□□□ -2.14
CCDC43Q96MW1 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.66□□□□□ -2.14
CCDC43Q96MW1 JTBP1-201ENST00000441314 247 ntBASIC1.66□□□□□ -2.14
CCDC43Q96MW1 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC1.66□□□□□ -2.14
CCDC43Q96MW1 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 405.2 ms