Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC5.61□□□□□ -1.51
CCDC61Q9Y6R9 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC61Q9Y6R9 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC61Q9Y6R9 RNU6-529P-201ENST00000363383 104 ntBASIC5.61□□□□□ -1.51
CCDC61Q9Y6R9 SNORA70.4-201ENST00000365509 134 ntBASIC5.61□□□□□ -1.51
CCDC61Q9Y6R9 MIR200C-201ENST00000384980 68 ntBASIC5.61□□□□□ -1.51
CCDC61Q9Y6R9 MIR449B-201ENST00000384995 97 ntBASIC5.61□□□□□ -1.51
CCDC61Q9Y6R9 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC61Q9Y6R9 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC61Q9Y6R9 NDUFB4P6-201ENST00000436819 366 ntBASIC5.61□□□□□ -1.51
CCDC61Q9Y6R9 AC245102.2-201ENST00000448956 180 ntBASIC5.61□□□□□ -1.51
CCDC61Q9Y6R9 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC61Q9Y6R9 RPS3P1-201ENST00000456781 192 ntBASIC5.61□□□□□ -1.51
CCDC61Q9Y6R9 snoU13.14-201ENST00000459372 104 ntBASIC5.61□□□□□ -1.51
CCDC61Q9Y6R9 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.61□□□□□ -1.51
CCDC61Q9Y6R9 HMGN2P9-201ENST00000476875 229 ntBASIC5.61□□□□□ -1.51
CCDC61Q9Y6R9 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.61□□□□□ -1.51
CCDC61Q9Y6R9 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC61Q9Y6R9 SCARNA15-202ENST00000516881 127 ntBASIC5.61□□□□□ -1.51
CCDC61Q9Y6R9 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC61Q9Y6R9 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC61Q9Y6R9 AC004944.1-201ENST00000517807 3059 ntBASIC5.61□□□□□ -1.51
CCDC61Q9Y6R9 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC61Q9Y6R9 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC61Q9Y6R9 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC61Q9Y6R9 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC61Q9Y6R9 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC61Q9Y6R9 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC61Q9Y6R9 SNORA73.2-201ENST00000364946 201 ntBASIC5.6□□□□□ -1.51
CCDC61Q9Y6R9 SNORD116-22-201ENST00000384430 92 ntBASIC5.6□□□□□ -1.51
CCDC61Q9Y6R9 AL139095.1-201ENST00000404326 391 ntBASIC5.6□□□□□ -1.51
CCDC61Q9Y6R9 AC063976.3-201ENST00000426849 329 ntBASIC5.6□□□□□ -1.51
CCDC61Q9Y6R9 RNU6ATAC12P-201ENST00000516542 115 ntBASIC5.6□□□□□ -1.51
CCDC61Q9Y6R9 AC027419.1-201ENST00000522976 328 ntBASIC5.6□□□□□ -1.51
CCDC61Q9Y6R9 AC008739.3-201ENST00000603262 127 ntBASIC5.6□□□□□ -1.51
CCDC61Q9Y6R9 AL138721.1-201ENST00000616756 179 ntBASIC5.6□□□□□ -1.51
CCDC61Q9Y6R9 HOTTIP_4.1-201ENST00000618195 165 ntBASIC5.6□□□□□ -1.51
CCDC61Q9Y6R9 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 MIR208A-201ENST00000362287 71 ntBASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 Y_RNA.40-201ENST00000362645 93 ntBASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 RNU6-690P-201ENST00000365242 106 ntBASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 MIR493-201ENST00000385254 89 ntBASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 MT-TI-201ENST00000387365 69 ntBASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 RNU6-816P-201ENST00000390914 107 ntBASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 RNU6-1268P-201ENST00000391214 107 ntBASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 RNU6-1239P-201ENST00000391310 107 ntBASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 PVALB-202ENST00000404171 422 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 RBMY2UP-201ENST00000453474 324 ntBASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 RPS29P20-201ENST00000489592 171 ntBASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 MIR3163-201ENST00000581592 73 ntBASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 MIR3199-2-201ENST00000636243 86 ntBASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC61Q9Y6R9 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.52
CCDC61Q9Y6R9 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.52
CCDC61Q9Y6R9 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.52
CCDC61Q9Y6R9 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC61Q9Y6R9 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC61Q9Y6R9 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC61Q9Y6R9 RNU6-486P-201ENST00000363116 107 ntBASIC5.58□□□□□ -1.52
CCDC61Q9Y6R9 TOMM22P1-201ENST00000418578 312 ntBASIC5.58□□□□□ -1.52
CCDC61Q9Y6R9 RNA5SP57-201ENST00000459463 123 ntBASIC5.58□□□□□ -1.52
CCDC61Q9Y6R9 RNU7-57P-201ENST00000459540 60 ntBASIC5.58□□□□□ -1.52
CCDC61Q9Y6R9 RNU6-162P-201ENST00000516228 103 ntBASIC5.58□□□□□ -1.52
CCDC61Q9Y6R9 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC61Q9Y6R9 YPEL5P3-201ENST00000547227 352 ntBASIC5.58□□□□□ -1.52
CCDC61Q9Y6R9 AC025627.2-201ENST00000576220 160 ntBASIC5.58□□□□□ -1.52
CCDC61Q9Y6R9 SNORA51-201ENST00000606420 132 ntBASIC5.58□□□□□ -1.52
CCDC61Q9Y6R9 IL33-203ENST00000456383 2501 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC61Q9Y6R9 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC5.58□□□□□ -1.52
CCDC61Q9Y6R9 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC61Q9Y6R9 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
CCDC61Q9Y6R9 AC007496.3-201ENST00000624987 3443 ntBASIC5.58□□□□□ -1.52
CCDC61Q9Y6R9 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC61Q9Y6R9 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC61Q9Y6R9 RNU6-644P-201ENST00000391155 98 ntBASIC5.57□□□□□ -1.52
CCDC61Q9Y6R9 RPL29P14-201ENST00000495837 428 ntBASIC5.57□□□□□ -1.52
CCDC61Q9Y6R9 RNU7-143P-201ENST00000516781 65 ntBASIC5.57□□□□□ -1.52
CCDC61Q9Y6R9 RNU6-1270P-201ENST00000517128 108 ntBASIC5.57□□□□□ -1.52
CCDC61Q9Y6R9 AC109329.2-201ENST00000519658 482 ntBASIC5.57□□□□□ -1.52
CCDC61Q9Y6R9 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC61Q9Y6R9 RPS15AP11-201ENST00000594193 385 ntBASIC5.57□□□□□ -1.52
CCDC61Q9Y6R9 AC021443.1-201ENST00000604478 211 ntBASIC5.57□□□□□ -1.52
CCDC61Q9Y6R9 TEX41-300ENST00000631048 69 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC61Q9Y6R9 MAPK10-320ENST00000641462 6696 ntBASIC5.57□□□□□ -1.52
CCDC61Q9Y6R9 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC61Q9Y6R9 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC61Q9Y6R9 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
CCDC61Q9Y6R9 AC026241.1-201ENST00000517873 2142 ntBASIC5.57□□□□□ -1.52
CCDC61Q9Y6R9 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 171.9 ms