Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC0.98□□□□□ -2.25
SHANK3Q9BYB0 ZNF114P1-201ENST00000453500 292 ntBASIC0.98□□□□□ -2.25
SHANK3Q9BYB0 RAP1BP2-201ENST00000478270 544 ntBASIC0.98□□□□□ -2.25
SHANK3Q9BYB0 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC0.98□□□□□ -2.25
SHANK3Q9BYB0 AC005178.1-201ENST00000508392 440 ntBASIC0.98□□□□□ -2.25
SHANK3Q9BYB0 NAF1-205ENST00000509434 385 ntTSL 3 BASIC0.98□□□□□ -2.25
SHANK3Q9BYB0 RNU6-1178P-201ENST00000516674 107 ntBASIC0.98□□□□□ -2.25
SHANK3Q9BYB0 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC0.98□□□□□ -2.25
SHANK3Q9BYB0 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC0.98□□□□□ -2.25
SHANK3Q9BYB0 AC008163.1-202ENST00000636004 2889 ntBASIC0.97□□□□□ -2.25
SHANK3Q9BYB0 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
SHANK3Q9BYB0 MIR26B-201ENST00000362251 77 ntBASIC0.97□□□□□ -2.25
SHANK3Q9BYB0 AL049545.1-201ENST00000401856 572 ntBASIC0.97□□□□□ -2.25
SHANK3Q9BYB0 RNA5SP100-201ENST00000410903 110 ntBASIC0.97□□□□□ -2.25
SHANK3Q9BYB0 RNA5SP59-201ENST00000410922 110 ntBASIC0.97□□□□□ -2.25
SHANK3Q9BYB0 AC002486.1-201ENST00000435098 391 ntBASIC0.97□□□□□ -2.25
SHANK3Q9BYB0 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC0.97□□□□□ -2.25
SHANK3Q9BYB0 AC132479.1-201ENST00000449160 144 ntBASIC0.97□□□□□ -2.25
SHANK3Q9BYB0 MTCYBP1-201ENST00000454315 1119 ntBASIC0.97□□□□□ -2.25
SHANK3Q9BYB0 RPL9P9-202ENST00000466501 579 ntBASIC0.97□□□□□ -2.25
SHANK3Q9BYB0 AC010409.1-201ENST00000487382 476 ntBASIC0.97□□□□□ -2.25
SHANK3Q9BYB0 RPS23P5-201ENST00000495419 428 ntBASIC0.97□□□□□ -2.25
SHANK3Q9BYB0 5S_rRNA.3-201ENST00000517021 110 ntBASIC0.97□□□□□ -2.25
SHANK3Q9BYB0 AC069113.1-201ENST00000517763 267 ntBASIC0.97□□□□□ -2.25
SHANK3Q9BYB0 AP001372.4-201ENST00000524889 472 ntBASIC0.97□□□□□ -2.25
SHANK3Q9BYB0 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC0.97□□□□□ -2.25
SHANK3Q9BYB0 MIR3915-201ENST00000578518 97 ntBASIC0.97□□□□□ -2.25
SHANK3Q9BYB0 AC006566.1-201ENST00000608943 513 ntBASIC0.97□□□□□ -2.25
SHANK3Q9BYB0 5S_rRNA.19-201ENST00000612131 110 ntBASIC0.97□□□□□ -2.25
SHANK3Q9BYB0 AC005520.5-201ENST00000613926 164 ntBASIC0.97□□□□□ -2.25
SHANK3Q9BYB0 AC008250.2-201ENST00000615261 205 ntBASIC0.97□□□□□ -2.25
SHANK3Q9BYB0 MIR6835-201ENST00000621552 64 ntBASIC0.97□□□□□ -2.25
SHANK3Q9BYB0 5S_rRNA.18-201ENST00000621941 110 ntBASIC0.97□□□□□ -2.25
SHANK3Q9BYB0 RNU6-181P-201ENST00000363225 107 ntBASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 RNU6-517P-201ENST00000384362 110 ntBASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 SNORA12-201ENST00000391162 147 ntBASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 MTCYBP2-201ENST00000407745 171 ntBASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 AC123900.1-201ENST00000420390 96 ntBASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 MTND2P9-201ENST00000422293 931 ntBASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 CYCSP46-201ENST00000423569 204 ntBASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 AL133396.1-201ENST00000432048 687 ntBASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 RNA5SP269-201ENST00000459032 137 ntBASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 AC016632.1-201ENST00000503994 196 ntBASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 AC079140.3-201ENST00000511111 550 ntBASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 RNU6-567P-201ENST00000516746 107 ntBASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 RNU6-445P-201ENST00000516949 107 ntBASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 AC073539.2-201ENST00000597113 165 ntBASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 AC146944.4-201ENST00000602697 718 ntBASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 AL034555.1-201ENST00000604816 211 ntBASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 Z84480.1-201ENST00000605131 311 ntBASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 AL121992.2-201ENST00000606262 256 ntBASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 AC063943.3-201ENST00000615562 356 ntBASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 AL390237.1-201ENST00000404226 1415 ntBASIC0.96□□□□□ -2.26
SHANK3Q9BYB0 Y_RNA.136-201ENST00000363444 102 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 RNU6-414P-201ENST00000363705 104 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 SNORD26-201ENST00000384147 75 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 RNU6-74P-201ENST00000384235 107 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 RNU2-7P-201ENST00000410794 178 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 RPL23AP95-201ENST00000426806 265 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 SNORA31.17-201ENST00000516953 127 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 RNU2-46P-201ENST00000517038 113 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 SNORA25.17-201ENST00000517184 124 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 AC004812.1-201ENST00000540773 146 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 MIR4653-201ENST00000585107 83 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 AC016925.2-201ENST00000605108 242 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 AC092354.1-201ENST00000606057 376 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 RNA5SP347-201ENST00000362445 119 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 RNU6-428P-201ENST00000362942 107 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 SNORA48.1-201ENST00000390879 135 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 RNU2-29P-201ENST00000410423 189 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 RN7SKP61-201ENST00000410642 295 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 MTND2P18-201ENST00000419962 1030 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 AC087477.1-201ENST00000465747 340 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 OR2A41P-201ENST00000473586 105 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 HMGN1P10-201ENST00000474557 553 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 HMGN1P13-201ENST00000505795 138 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 CYP4A27P-201ENST00000567218 190 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 PCGEM1.1-201ENST00000613431 131 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 AL136221.1-201ENST00000621449 509 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 AC007494.3-201ENST00000624660 743 ntBASIC0.95□□□□□ -2.26
SHANK3Q9BYB0 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
SHANK3Q9BYB0 RNU6-1019P-201ENST00000364424 107 ntBASIC0.94□□□□□ -2.26
SHANK3Q9BYB0 SNORD1A-201ENST00000364968 72 ntBASIC0.94□□□□□ -2.26
SHANK3Q9BYB0 RNU6-606P-201ENST00000384721 111 ntBASIC0.94□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 246.6 ms