Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC28AQ8IWP9 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.56□□□□□ -2
CCDC28AQ8IWP9 AL390123.1-201ENST00000603216 237 ntBASIC2.56□□□□□ -2
CCDC28AQ8IWP9 DLEU2_2.2-201ENST00000615474 90 ntBASIC2.56□□□□□ -2
CCDC28AQ8IWP9 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.56□□□□□ -2
CCDC28AQ8IWP9 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.56□□□□□ -2
CCDC28AQ8IWP9 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC28AQ8IWP9 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC28AQ8IWP9 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.55□□□□□ -2
CCDC28AQ8IWP9 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CCDC28AQ8IWP9 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CCDC28AQ8IWP9 RNA5SP51-201ENST00000364750 119 ntBASIC2.55□□□□□ -2
CCDC28AQ8IWP9 RNU6-708P-201ENST00000384217 107 ntBASIC2.55□□□□□ -2
CCDC28AQ8IWP9 Y_RNA.455-201ENST00000384230 98 ntBASIC2.55□□□□□ -2
CCDC28AQ8IWP9 RNU6-823P-201ENST00000391042 103 ntBASIC2.55□□□□□ -2
CCDC28AQ8IWP9 AL033519.2-201ENST00000403958 392 ntBASIC2.55□□□□□ -2
CCDC28AQ8IWP9 SNORD12B-201ENST00000410433 91 ntBASIC2.55□□□□□ -2
CCDC28AQ8IWP9 RNU2-48P-201ENST00000410694 191 ntBASIC2.55□□□□□ -2
CCDC28AQ8IWP9 SDAD1P3-201ENST00000427380 333 ntBASIC2.55□□□□□ -2
CCDC28AQ8IWP9 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC2.55□□□□□ -2
CCDC28AQ8IWP9 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.55□□□□□ -2
CCDC28AQ8IWP9 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC2.55□□□□□ -2
CCDC28AQ8IWP9 AL161912.2-201ENST00000565707 3007 ntBASIC2.55□□□□□ -2
CCDC28AQ8IWP9 MZT1P2-201ENST00000604387 248 ntBASIC2.55□□□□□ -2
CCDC28AQ8IWP9 AC124312.5-201ENST00000604451 268 ntBASIC2.55□□□□□ -2
CCDC28AQ8IWP9 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC2.55□□□□□ -2
CCDC28AQ8IWP9 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
CCDC28AQ8IWP9 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
CCDC28AQ8IWP9 RNU6-727P-201ENST00000363592 107 ntBASIC2.54□□□□□ -2
CCDC28AQ8IWP9 RNU6-743P-201ENST00000364151 106 ntBASIC2.54□□□□□ -2
CCDC28AQ8IWP9 SNORA63.7-201ENST00000365579 123 ntBASIC2.54□□□□□ -2
CCDC28AQ8IWP9 Y_RNA.527-201ENST00000384573 102 ntBASIC2.54□□□□□ -2
CCDC28AQ8IWP9 MIR218-2-201ENST00000385006 110 ntBASIC2.54□□□□□ -2
CCDC28AQ8IWP9 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
CCDC28AQ8IWP9 MIR300-201ENST00000401138 83 ntBASIC2.54□□□□□ -2
CCDC28AQ8IWP9 FCF1P4-201ENST00000448326 183 ntBASIC2.54□□□□□ -2
CCDC28AQ8IWP9 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC2.54□□□□□ -2
CCDC28AQ8IWP9 ATP5EP1-201ENST00000510257 156 ntBASIC2.54□□□□□ -2
CCDC28AQ8IWP9 SNORA31.11-201ENST00000516528 139 ntBASIC2.54□□□□□ -2
CCDC28AQ8IWP9 RNA5SP490-201ENST00000517141 136 ntBASIC2.54□□□□□ -2
CCDC28AQ8IWP9 AC034114.1-201ENST00000520293 285 ntBASIC2.54□□□□□ -2
CCDC28AQ8IWP9 RRN3P3-201ENST00000549207 578 ntBASIC2.54□□□□□ -2
CCDC28AQ8IWP9 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.54□□□□□ -2
CCDC28AQ8IWP9 MIR5194-201ENST00000582634 120 ntBASIC2.54□□□□□ -2
CCDC28AQ8IWP9 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.54□□□□□ -2
CCDC28AQ8IWP9 uc_338.1-201ENST00000612113 180 ntBASIC2.54□□□□□ -2
CCDC28AQ8IWP9 uc_338.25-201ENST00000613756 156 ntBASIC2.54□□□□□ -2
CCDC28AQ8IWP9 AC006133.1-201ENST00000617106 264 ntBASIC2.54□□□□□ -2
CCDC28AQ8IWP9 AC068205.3-201ENST00000636385 468 ntBASIC2.54□□□□□ -2
CCDC28AQ8IWP9 U6.92-201ENST00000636464 89 ntBASIC2.54□□□□□ -2
CCDC28AQ8IWP9 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.54□□□□□ -2
CCDC28AQ8IWP9 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.53□□□□□ -2
CCDC28AQ8IWP9 MIR6073-201ENST00000352083 89 ntBASIC2.53□□□□□ -2
CCDC28AQ8IWP9 Y_RNA.162-201ENST00000363683 102 ntBASIC2.53□□□□□ -2
CCDC28AQ8IWP9 RNU6-450P-201ENST00000364654 107 ntBASIC2.53□□□□□ -2
CCDC28AQ8IWP9 SNORD31B-201ENST00000364977 69 ntBASIC2.53□□□□□ -2
CCDC28AQ8IWP9 SNORA62.3-201ENST00000365110 153 ntBASIC2.53□□□□□ -2
CCDC28AQ8IWP9 Y_RNA.380-201ENST00000365663 111 ntBASIC2.53□□□□□ -2
CCDC28AQ8IWP9 MIR200C-201ENST00000384980 68 ntBASIC2.53□□□□□ -2
CCDC28AQ8IWP9 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.53□□□□□ -2
CCDC28AQ8IWP9 RNU6-985P-201ENST00000410182 104 ntBASIC2.53□□□□□ -2
CCDC28AQ8IWP9 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.53□□□□□ -2
CCDC28AQ8IWP9 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.53□□□□□ -2
CCDC28AQ8IWP9 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.53□□□□□ -2
CCDC28AQ8IWP9 AL118496.2-201ENST00000448300 230 ntBASIC2.53□□□□□ -2
CCDC28AQ8IWP9 AC010469.2-201ENST00000496412 480 ntBASIC2.53□□□□□ -2
CCDC28AQ8IWP9 RNU6-764P-201ENST00000516396 105 ntBASIC2.53□□□□□ -2
CCDC28AQ8IWP9 RNU6-1012P-201ENST00000516606 109 ntBASIC2.53□□□□□ -2
CCDC28AQ8IWP9 RNU1-117P-201ENST00000517041 158 ntBASIC2.53□□□□□ -2
CCDC28AQ8IWP9 RNU6-1137P-201ENST00000517073 99 ntBASIC2.53□□□□□ -2
CCDC28AQ8IWP9 RNU1-45P-201ENST00000517191 141 ntBASIC2.53□□□□□ -2
CCDC28AQ8IWP9 NDUFA5P6-201ENST00000542110 379 ntBASIC2.53□□□□□ -2
CCDC28AQ8IWP9 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.53□□□□□ -2
CCDC28AQ8IWP9 AL121655.1-201ENST00000605811 308 ntBASIC2.53□□□□□ -2
CCDC28AQ8IWP9 AC008873.1-201ENST00000625051 138 ntBASIC2.53□□□□□ -2
CCDC28AQ8IWP9 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
CCDC28AQ8IWP9 AC080100.1-201ENST00000624239 5356 ntBASIC2.53□□□□□ -2.01
CCDC28AQ8IWP9 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.53□□□□□ -2.01
CCDC28AQ8IWP9 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 SNORA63C-201ENST00000364578 129 ntBASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 RNA5SP479-201ENST00000364858 117 ntBASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 RNU6-438P-201ENST00000365561 103 ntBASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 RNU6-738P-201ENST00000384531 106 ntBASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 U8.11-201ENST00000384699 133 ntBASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 MIR586-201ENST00000385035 97 ntBASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 RNA5SP229-201ENST00000410809 99 ntBASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 UQCRBP2-201ENST00000447827 297 ntBASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 HMGN2P18-201ENST00000450680 270 ntBASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 PCNPP5-201ENST00000452246 481 ntBASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 U8.18-201ENST00000459285 133 ntBASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 AC074133.1-201ENST00000515696 183 ntBASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 RNU1-95P-201ENST00000516357 160 ntBASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 RNU1-128P-201ENST00000516704 160 ntBASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 Y_RNA.715-201ENST00000517082 110 ntBASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 AP002404.1-201ENST00000532005 451 ntBASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 SARNP-203ENST00000552080 726 ntTSL 2 BASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 AC106785.1-201ENST00000565935 262 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 191.6 ms