Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC61Q9Y6R9 AC006011.1-201ENST00000442758 349 ntBASIC5.71□□□□□ -1.5
CCDC61Q9Y6R9 RPL39P25-201ENST00000449384 154 ntBASIC5.71□□□□□ -1.5
CCDC61Q9Y6R9 ABCF2P2-201ENST00000450549 296 ntBASIC5.71□□□□□ -1.5
CCDC61Q9Y6R9 snoU13.24-201ENST00000458998 104 ntBASIC5.71□□□□□ -1.5
CCDC61Q9Y6R9 RNU4ATAC17P-201ENST00000517272 120 ntBASIC5.71□□□□□ -1.5
CCDC61Q9Y6R9 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC61Q9Y6R9 MIR4458-201ENST00000578872 75 ntBASIC5.71□□□□□ -1.5
CCDC61Q9Y6R9 MIR5685-201ENST00000579080 79 ntBASIC5.71□□□□□ -1.5
CCDC61Q9Y6R9 AL929325.1-201ENST00000603096 117 ntBASIC5.71□□□□□ -1.5
CCDC61Q9Y6R9 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC61Q9Y6R9 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC61Q9Y6R9 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC61Q9Y6R9 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC61Q9Y6R9 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC61Q9Y6R9 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC61Q9Y6R9 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC5.71□□□□□ -1.5
CCDC61Q9Y6R9 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC61Q9Y6R9 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC61Q9Y6R9 AP000542.2-201ENST00000623199 6179 ntBASIC5.7□□□□□ -1.5
CCDC61Q9Y6R9 AC016588.2-201ENST00000632484 3021 ntBASIC5.7□□□□□ -1.5
CCDC61Q9Y6R9 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC61Q9Y6R9 Y_RNA.313-201ENST00000365095 103 ntBASIC5.7□□□□□ -1.5
CCDC61Q9Y6R9 ATP6V0E1P1-201ENST00000412537 226 ntBASIC5.7□□□□□ -1.5
CCDC61Q9Y6R9 HSPE1P12-201ENST00000412576 301 ntBASIC5.7□□□□□ -1.5
CCDC61Q9Y6R9 AL445584.1-201ENST00000431451 330 ntBASIC5.7□□□□□ -1.5
CCDC61Q9Y6R9 AC018634.1-201ENST00000437554 401 ntBASIC5.7□□□□□ -1.5
CCDC61Q9Y6R9 IFNWP4-201ENST00000453148 294 ntBASIC5.7□□□□□ -1.5
CCDC61Q9Y6R9 AC093663.1-201ENST00000497190 394 ntBASIC5.7□□□□□ -1.5
CCDC61Q9Y6R9 RNY4P20-201ENST00000516678 93 ntBASIC5.7□□□□□ -1.5
CCDC61Q9Y6R9 AC107918.3-201ENST00000533272 382 ntBASIC5.7□□□□□ -1.5
CCDC61Q9Y6R9 SNRPGP15-201ENST00000600149 222 ntBASIC5.7□□□□□ -1.5
CCDC61Q9Y6R9 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
CCDC61Q9Y6R9 AC005086.4-201ENST00000623065 213 ntBASIC5.7□□□□□ -1.5
CCDC61Q9Y6R9 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
CCDC61Q9Y6R9 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC5.7□□□□□ -1.5
CCDC61Q9Y6R9 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC61Q9Y6R9 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.7□□□□□ -1.5
CCDC61Q9Y6R9 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC61Q9Y6R9 AL139811.1-201ENST00000424779 2299 ntBASIC5.69□□□□□ -1.5
CCDC61Q9Y6R9 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC61Q9Y6R9 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC61Q9Y6R9 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC61Q9Y6R9 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC61Q9Y6R9 RNU4-15P-201ENST00000362613 141 ntBASIC5.69□□□□□ -1.5
CCDC61Q9Y6R9 MIR181A2-201ENST00000384863 110 ntBASIC5.69□□□□□ -1.5
CCDC61Q9Y6R9 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC61Q9Y6R9 NDUFB1P1-201ENST00000435191 180 ntBASIC5.69□□□□□ -1.5
CCDC61Q9Y6R9 snoU13.22-201ENST00000459428 104 ntBASIC5.69□□□□□ -1.5
CCDC61Q9Y6R9 AC145146.1-201ENST00000496370 254 ntBASIC5.69□□□□□ -1.5
CCDC61Q9Y6R9 RNU6-240P-201ENST00000516098 97 ntBASIC5.69□□□□□ -1.5
CCDC61Q9Y6R9 RNU6-63P-201ENST00000516690 95 ntBASIC5.69□□□□□ -1.5
CCDC61Q9Y6R9 AC107934.2-201ENST00000518653 310 ntBASIC5.69□□□□□ -1.5
CCDC61Q9Y6R9 AC021739.1-201ENST00000559631 174 ntBASIC5.69□□□□□ -1.5
CCDC61Q9Y6R9 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC61Q9Y6R9 AC012442.3-202ENST00000636742 206 ntBASIC5.69□□□□□ -1.5
CCDC61Q9Y6R9 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC61Q9Y6R9 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC61Q9Y6R9 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
CCDC61Q9Y6R9 SUPT16HP1-201ENST00000537175 3133 ntBASIC5.69□□□□□ -1.5
CCDC61Q9Y6R9 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC5.68□□□□□ -1.5
CCDC61Q9Y6R9 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC61Q9Y6R9 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC61Q9Y6R9 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
CCDC61Q9Y6R9 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC61Q9Y6R9 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
CCDC61Q9Y6R9 RNU6-600P-201ENST00000362524 99 ntBASIC5.68□□□□□ -1.5
CCDC61Q9Y6R9 SNORA71.3-201ENST00000362582 128 ntBASIC5.68□□□□□ -1.5
CCDC61Q9Y6R9 ACEA_U3.1-201ENST00000363057 217 ntBASIC5.68□□□□□ -1.5
CCDC61Q9Y6R9 Y_RNA.344-201ENST00000365381 112 ntBASIC5.68□□□□□ -1.5
CCDC61Q9Y6R9 RNA5SP22-201ENST00000365393 109 ntBASIC5.68□□□□□ -1.5
CCDC61Q9Y6R9 RNU6-979P-201ENST00000383896 107 ntBASIC5.68□□□□□ -1.5
CCDC61Q9Y6R9 AL133547.1-201ENST00000448546 220 ntBASIC5.68□□□□□ -1.5
CCDC61Q9Y6R9 AC010598.1-201ENST00000510378 103 ntBASIC5.68□□□□□ -1.5
CCDC61Q9Y6R9 RNA5SP20-201ENST00000515976 84 ntBASIC5.68□□□□□ -1.5
CCDC61Q9Y6R9 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC61Q9Y6R9 MIR5588-201ENST00000581890 63 ntBASIC5.68□□□□□ -1.5
CCDC61Q9Y6R9 RNA5SP108-201ENST00000605921 117 ntBASIC5.68□□□□□ -1.5
CCDC61Q9Y6R9 5S_rRNA.13-201ENST00000622298 123 ntBASIC5.68□□□□□ -1.5
CCDC61Q9Y6R9 AL162726.3-218ENST00000636401 95 ntBASIC5.68□□□□□ -1.5
CCDC61Q9Y6R9 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC61Q9Y6R9 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC61Q9Y6R9 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC61Q9Y6R9 MAPK10-303ENST00000641324 3959 ntBASIC5.67□□□□□ -1.5
CCDC61Q9Y6R9 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC61Q9Y6R9 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
CCDC61Q9Y6R9 RNU6-675P-201ENST00000384236 104 ntBASIC5.67□□□□□ -1.5
CCDC61Q9Y6R9 MIR562-201ENST00000384894 95 ntBASIC5.67□□□□□ -1.5
CCDC61Q9Y6R9 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC61Q9Y6R9 AC245291.1-201ENST00000419501 328 ntBASIC5.67□□□□□ -1.5
CCDC61Q9Y6R9 HMGN2P20-201ENST00000437531 273 ntBASIC5.67□□□□□ -1.5
CCDC61Q9Y6R9 SNRPCP3-201ENST00000474888 476 ntBASIC5.67□□□□□ -1.5
CCDC61Q9Y6R9 HMGB1P22-201ENST00000505315 124 ntBASIC5.67□□□□□ -1.5
CCDC61Q9Y6R9 AC096725.1-201ENST00000514266 313 ntBASIC5.67□□□□□ -1.5
CCDC61Q9Y6R9 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC61Q9Y6R9 RNU6-1018P-201ENST00000516577 106 ntBASIC5.67□□□□□ -1.5
CCDC61Q9Y6R9 HSPE1P7-201ENST00000604681 321 ntBASIC5.67□□□□□ -1.5
CCDC61Q9Y6R9 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC61Q9Y6R9 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC61Q9Y6R9 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 287 ms