Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 AC007496.3-201ENST00000624987 3443 ntBASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC4.03□□□□□ -1.76
CCDC39Q9UFE4 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC39Q9UFE4 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC39Q9UFE4 AC092593.1-201ENST00000515413 1815 ntBASIC4.03□□□□□ -1.76
CCDC39Q9UFE4 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC39Q9UFE4 FTLP6-201ENST00000355274 422 ntBASIC4.03□□□□□ -1.76
CCDC39Q9UFE4 RNU4-17P-201ENST00000365598 141 ntBASIC4.03□□□□□ -1.76
CCDC39Q9UFE4 RNU6-1286P-201ENST00000383871 107 ntBASIC4.03□□□□□ -1.76
CCDC39Q9UFE4 RNU6-1145P-201ENST00000384246 107 ntBASIC4.03□□□□□ -1.76
CCDC39Q9UFE4 RNU6-541P-201ENST00000384709 110 ntBASIC4.03□□□□□ -1.76
CCDC39Q9UFE4 SNORA40C-201ENST00000391285 128 ntBASIC4.03□□□□□ -1.76
CCDC39Q9UFE4 MIR513C-201ENST00000401352 84 ntBASIC4.03□□□□□ -1.76
CCDC39Q9UFE4 AC091390.3-201ENST00000426478 338 ntBASIC4.03□□□□□ -1.76
CCDC39Q9UFE4 RPS15AP5-201ENST00000436276 388 ntBASIC4.03□□□□□ -1.76
CCDC39Q9UFE4 AC104027.1-201ENST00000521887 300 ntBASIC4.03□□□□□ -1.76
CCDC39Q9UFE4 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC39Q9UFE4 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.03□□□□□ -1.76
CCDC39Q9UFE4 MED28P6-201ENST00000558776 231 ntBASIC4.03□□□□□ -1.76
CCDC39Q9UFE4 AC022441.3-201ENST00000605737 136 ntBASIC4.03□□□□□ -1.76
CCDC39Q9UFE4 AC005520.5-201ENST00000613926 164 ntBASIC4.03□□□□□ -1.76
CCDC39Q9UFE4 AC068831.7-201ENST00000616954 363 ntBASIC4.03□□□□□ -1.76
CCDC39Q9UFE4 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 RNU6-78P-201ENST00000362897 107 ntBASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 RNA5SP51-201ENST00000364750 119 ntBASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 RNA5SP479-201ENST00000364858 117 ntBASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 RNU6-275P-201ENST00000364910 107 ntBASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 RNU6-166P-201ENST00000384371 107 ntBASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 RNY4P18-201ENST00000391107 89 ntBASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 BTF3P11-201ENST00000426582 477 ntBASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 Z82210.1-201ENST00000440037 231 ntBASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 AC005042.3-201ENST00000453230 174 ntBASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 AL049874.1-201ENST00000489560 388 ntBASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 RNU1-61P-201ENST00000516107 151 ntBASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 RNA5SP165-201ENST00000517142 115 ntBASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 UBL5P4-201ENST00000562584 236 ntBASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 AL670379.2-201ENST00000604983 252 ntBASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 AC107294.3-201ENST00000609211 526 ntBASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 Y_RNA.802-201ENST00000614892 130 ntBASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC39Q9UFE4 AC008568.2-201ENST00000623862 2313 ntBASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 AC110491.1-201ENST00000562191 2010 ntBASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 MIR148B-201ENST00000362252 99 ntBASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 RNU6-1272P-201ENST00000362776 107 ntBASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 SNORD56.3-201ENST00000363507 71 ntBASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 RNU6-105P-201ENST00000363909 104 ntBASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 Y_RNA.542-201ENST00000384641 111 ntBASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 ATP5A1P2-201ENST00000412323 255 ntBASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 AL035423.1-201ENST00000420331 213 ntBASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 snoU109.2-201ENST00000459316 135 ntBASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 RNU6-966P-201ENST00000516479 104 ntBASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 SNORA31.19-201ENST00000517079 126 ntBASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 AC026333.2-201ENST00000542164 106 ntBASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 MIR4679-2-201ENST00000578358 77 ntBASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 MIR3145-201ENST00000580727 82 ntBASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 AP002826.1-201ENST00000608835 315 ntBASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 MIR8058-201ENST00000615737 89 ntBASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC4.01□□□□□ -1.77
CCDC39Q9UFE4 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4□□□□□ -1.77
CCDC39Q9UFE4 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC39Q9UFE4 AL353743.1-202ENST00000431724 1695 ntBASIC4□□□□□ -1.77
CCDC39Q9UFE4 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC39Q9UFE4 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC39Q9UFE4 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4□□□□□ -1.77
CCDC39Q9UFE4 Y_RNA.319-201ENST00000365138 92 ntBASIC4□□□□□ -1.77
CCDC39Q9UFE4 RNU6-429P-201ENST00000384582 108 ntBASIC4□□□□□ -1.77
CCDC39Q9UFE4 EIF4EBP2P3-201ENST00000403144 334 ntBASIC4□□□□□ -1.77
CCDC39Q9UFE4 AC007560.1-201ENST00000426912 237 ntBASIC4□□□□□ -1.77
CCDC39Q9UFE4 AL357552.1-201ENST00000445254 415 ntBASIC4□□□□□ -1.77
CCDC39Q9UFE4 AC074290.1-201ENST00000448883 135 ntBASIC4□□□□□ -1.77
CCDC39Q9UFE4 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC4□□□□□ -1.77
CCDC39Q9UFE4 RN7SL594P-201ENST00000470590 287 ntBASIC4□□□□□ -1.77
CCDC39Q9UFE4 RNA5SP380-201ENST00000517190 98 ntBASIC4□□□□□ -1.77
CCDC39Q9UFE4 CYCSP26-201ENST00000534107 320 ntBASIC4□□□□□ -1.77
CCDC39Q9UFE4 DNAJC19P2-201ENST00000593340 302 ntBASIC4□□□□□ -1.77
CCDC39Q9UFE4 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
CCDC39Q9UFE4 AC241585.2-209ENST00000638217 143 ntBASIC4□□□□□ -1.77
CCDC39Q9UFE4 DLD-214ENST00000639772 421 ntTSL 5 BASIC4□□□□□ -1.77
CCDC39Q9UFE4 FTO-223ENST00000640179 210 ntTSL 5 BASIC4□□□□□ -1.77
CCDC39Q9UFE4 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC39Q9UFE4 OTUD4P1-201ENST00000237841 3067 ntBASIC4□□□□□ -1.77
CCDC39Q9UFE4 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 244.6 ms