Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AC009310.1-201ENST00000414414 451 ntBASIC1.93□□□□□ -2.1
CCDC43Q96MW1 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC1.93□□□□□ -2.1
CCDC43Q96MW1 RPL23AP95-201ENST00000426806 265 ntBASIC1.93□□□□□ -2.1
CCDC43Q96MW1 AC073464.1-201ENST00000429823 534 ntBASIC1.93□□□□□ -2.1
CCDC43Q96MW1 FTH1P25-201ENST00000447665 469 ntBASIC1.93□□□□□ -2.1
CCDC43Q96MW1 snoU13.23-201ENST00000458863 104 ntBASIC1.93□□□□□ -2.1
CCDC43Q96MW1 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.93□□□□□ -2.1
CCDC43Q96MW1 MIR3122-201ENST00000577243 73 ntBASIC1.93□□□□□ -2.1
CCDC43Q96MW1 AC073648.5-201ENST00000603502 305 ntBASIC1.93□□□□□ -2.1
CCDC43Q96MW1 AL391646.1-201ENST00000603860 190 ntBASIC1.93□□□□□ -2.1
CCDC43Q96MW1 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.93□□□□□ -2.1
CCDC43Q96MW1 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.93□□□□□ -2.1
CCDC43Q96MW1 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC43Q96MW1 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC43Q96MW1 AC092268.1-201ENST00000342691 405 ntBASIC1.92□□□□□ -2.1
CCDC43Q96MW1 Y_RNA.381-201ENST00000365666 102 ntBASIC1.92□□□□□ -2.1
CCDC43Q96MW1 AL627390.1-201ENST00000396055 340 ntBASIC1.92□□□□□ -2.1
CCDC43Q96MW1 RNA5SP201-201ENST00000410316 124 ntBASIC1.92□□□□□ -2.1
CCDC43Q96MW1 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC43Q96MW1 AC073415.1-201ENST00000449240 153 ntBASIC1.92□□□□□ -2.1
CCDC43Q96MW1 AC016632.1-201ENST00000503994 196 ntBASIC1.92□□□□□ -2.1
CCDC43Q96MW1 AC005741.1-201ENST00000511094 432 ntBASIC1.92□□□□□ -2.1
CCDC43Q96MW1 MTND4P7-201ENST00000523876 130 ntBASIC1.92□□□□□ -2.1
CCDC43Q96MW1 AC087441.2-201ENST00000529141 262 ntBASIC1.92□□□□□ -2.1
CCDC43Q96MW1 MIR4524B-201ENST00000581569 115 ntBASIC1.92□□□□□ -2.1
CCDC43Q96MW1 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.92□□□□□ -2.1
CCDC43Q96MW1 AP001836.1-201ENST00000604675 523 ntBASIC1.92□□□□□ -2.1
CCDC43Q96MW1 AC007684.1-201ENST00000609671 477 ntBASIC1.92□□□□□ -2.1
CCDC43Q96MW1 PCGEM1.1-201ENST00000613431 131 ntBASIC1.92□□□□□ -2.1
CCDC43Q96MW1 uc_338.34-201ENST00000617467 174 ntBASIC1.92□□□□□ -2.1
CCDC43Q96MW1 LINC02555-201ENST00000563933 1951 ntBASIC1.91□□□□□ -2.1
CCDC43Q96MW1 AP000568.1-201ENST00000282964 442 ntBASIC1.91□□□□□ -2.1
CCDC43Q96MW1 CBX3P1-201ENST00000325243 554 ntBASIC1.91□□□□□ -2.1
CCDC43Q96MW1 U3.9-201ENST00000363823 204 ntBASIC1.91□□□□□ -2.1
CCDC43Q96MW1 MIR764-201ENST00000390811 85 ntBASIC1.91□□□□□ -2.1
CCDC43Q96MW1 RNU6-1158P-201ENST00000391167 107 ntBASIC1.91□□□□□ -2.1
CCDC43Q96MW1 RNA5SP100-201ENST00000410903 110 ntBASIC1.91□□□□□ -2.1
CCDC43Q96MW1 RNA5SP59-201ENST00000410922 110 ntBASIC1.91□□□□□ -2.1
CCDC43Q96MW1 RNU2-41P-201ENST00000410991 178 ntBASIC1.91□□□□□ -2.1
CCDC43Q96MW1 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.91□□□□□ -2.1
CCDC43Q96MW1 MTCO2P19-201ENST00000427513 598 ntBASIC1.91□□□□□ -2.1
CCDC43Q96MW1 VN1R108P-201ENST00000431580 830 ntBASIC1.91□□□□□ -2.1
CCDC43Q96MW1 AC002486.1-201ENST00000435098 391 ntBASIC1.91□□□□□ -2.1
CCDC43Q96MW1 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC1.91□□□□□ -2.1
CCDC43Q96MW1 SNRPEP8-201ENST00000442866 260 ntBASIC1.91□□□□□ -2.1
CCDC43Q96MW1 AL163973.1-201ENST00000484753 577 ntBASIC1.91□□□□□ -2.1
CCDC43Q96MW1 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
CCDC43Q96MW1 RNU6-250P-201ENST00000516958 103 ntBASIC1.91□□□□□ -2.1
CCDC43Q96MW1 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.91□□□□□ -2.1
CCDC43Q96MW1 AC004223.2-201ENST00000590309 544 ntBASIC1.91□□□□□ -2.1
CCDC43Q96MW1 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.91□□□□□ -2.1
CCDC43Q96MW1 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.91□□□□□ -2.1
CCDC43Q96MW1 AL450472.1-202ENST00000637286 180 ntBASIC1.91□□□□□ -2.1
CCDC43Q96MW1 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.9□□□□□ -2.1
CCDC43Q96MW1 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.1
CCDC43Q96MW1 MTND4P23-201ENST00000447723 1363 ntBASIC1.9□□□□□ -2.11
CCDC43Q96MW1 SNORD48-201ENST00000364953 64 ntBASIC1.9□□□□□ -2.11
CCDC43Q96MW1 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.9□□□□□ -2.11
CCDC43Q96MW1 RNU6-1103P-201ENST00000384150 107 ntBASIC1.9□□□□□ -2.11
CCDC43Q96MW1 SNORA36A-201ENST00000384221 132 ntBASIC1.9□□□□□ -2.11
CCDC43Q96MW1 RNU6-378P-201ENST00000384324 107 ntBASIC1.9□□□□□ -2.11
CCDC43Q96MW1 SNORA26.3-201ENST00000391119 136 ntBASIC1.9□□□□□ -2.11
CCDC43Q96MW1 MTCO3P41-201ENST00000414801 328 ntBASIC1.9□□□□□ -2.11
CCDC43Q96MW1 AC123900.1-201ENST00000420390 96 ntBASIC1.9□□□□□ -2.11
CCDC43Q96MW1 AL353193.1-201ENST00000421444 268 ntBASIC1.9□□□□□ -2.11
CCDC43Q96MW1 AL121601.2-201ENST00000438019 707 ntBASIC1.9□□□□□ -2.11
CCDC43Q96MW1 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC1.9□□□□□ -2.11
CCDC43Q96MW1 MTCO1P19-201ENST00000443487 500 ntBASIC1.9□□□□□ -2.11
CCDC43Q96MW1 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.9□□□□□ -2.11
CCDC43Q96MW1 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC43Q96MW1 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC43Q96MW1 AC130509.1-201ENST00000464158 433 ntBASIC1.9□□□□□ -2.11
CCDC43Q96MW1 RPS3AP17-201ENST00000472594 777 ntBASIC1.9□□□□□ -2.11
CCDC43Q96MW1 CCDC34P1-201ENST00000507441 517 ntBASIC1.9□□□□□ -2.11
CCDC43Q96MW1 ATP5EP1-201ENST00000510257 156 ntBASIC1.9□□□□□ -2.11
CCDC43Q96MW1 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC43Q96MW1 MDM2-233ENST00000545204 398 ntTSL 5 BASIC1.9□□□□□ -2.11
CCDC43Q96MW1 AC090115.3-201ENST00000553218 849 ntBASIC1.9□□□□□ -2.11
CCDC43Q96MW1 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC43Q96MW1 AC010900.2-201ENST00000604508 210 ntBASIC1.9□□□□□ -2.11
CCDC43Q96MW1 HULC.1-201ENST00000612720 240 ntBASIC1.9□□□□□ -2.11
CCDC43Q96MW1 AL359757.2-201ENST00000624309 274 ntBASIC1.9□□□□□ -2.11
CCDC43Q96MW1 ELL2P3-201ENST00000457883 1602 ntBASIC1.9□□□□□ -2.11
CCDC43Q96MW1 RNU6-438P-201ENST00000365561 103 ntBASIC1.89□□□□□ -2.11
CCDC43Q96MW1 SNORD73A-201ENST00000386062 65 ntBASIC1.89□□□□□ -2.11
CCDC43Q96MW1 RNA5SP219-201ENST00000390940 113 ntBASIC1.89□□□□□ -2.11
CCDC43Q96MW1 VN1R36P-201ENST00000414936 291 ntBASIC1.89□□□□□ -2.11
CCDC43Q96MW1 CYCSP49-201ENST00000420810 319 ntBASIC1.89□□□□□ -2.11
CCDC43Q96MW1 RPL31P63-201ENST00000422565 375 ntBASIC1.89□□□□□ -2.11
CCDC43Q96MW1 AC008628.2-201ENST00000502605 298 ntBASIC1.89□□□□□ -2.11
CCDC43Q96MW1 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC1.89□□□□□ -2.11
CCDC43Q96MW1 RN7SKP298-201ENST00000515950 94 ntBASIC1.89□□□□□ -2.11
CCDC43Q96MW1 RNU2-44P-201ENST00000516795 194 ntBASIC1.89□□□□□ -2.11
CCDC43Q96MW1 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.89□□□□□ -2.11
CCDC43Q96MW1 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.89□□□□□ -2.11
CCDC43Q96MW1 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.89□□□□□ -2.11
CCDC43Q96MW1 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.89□□□□□ -2.11
CCDC43Q96MW1 Z98751.3-201ENST00000604447 521 ntBASIC1.89□□□□□ -2.11
CCDC43Q96MW1 AC068944.2-201ENST00000610373 403 ntBASIC1.89□□□□□ -2.11
CCDC43Q96MW1 DLEU2_1.1-201ENST00000612089 120 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 193.9 ms