Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC4.92□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC4.92□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC4.92□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC4.92□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AC096638.1-201ENST00000444678 216 ntBASIC4.92□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AC009237.7-201ENST00000447357 229 ntBASIC4.92□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AC074290.1-201ENST00000448883 135 ntBASIC4.92□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AL353705.4-201ENST00000449661 238 ntBASIC4.92□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNU6-1211P-201ENST00000459179 105 ntBASIC4.92□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 SUMO2P18-201ENST00000518873 252 ntBASIC4.92□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 UTP23-205ENST00000520733 369 ntTSL 3 BASIC4.92□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC4.92□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 snoU18.1-201ENST00000629629 71 ntBASIC4.92□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 FAM35DP-201ENST00000323387 2712 ntBASIC4.92□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.92□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNU1-18P-201ENST00000363062 164 ntBASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNA5SP322-201ENST00000363617 119 ntBASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNU6-263P-201ENST00000363811 107 ntBASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNU5E-7P-201ENST00000365290 117 ntBASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 MIR32-201ENST00000384965 70 ntBASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 HMGN2P8-201ENST00000391458 268 ntBASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNU6-712P-201ENST00000410558 100 ntBASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AC099336.2-201ENST00000422457 254 ntBASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 MTATP6P4-201ENST00000427725 675 ntBASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 IFNA11P-201ENST00000446352 526 ntBASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AC099560.2-201ENST00000457554 255 ntBASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RPL21P10-201ENST00000463521 490 ntBASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AC025445.1-201ENST00000502728 300 ntBASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 SNORA25.12-201ENST00000516202 82 ntBASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNU7-121P-201ENST00000516604 62 ntBASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNU6-1234P-201ENST00000516877 103 ntBASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 YPEL5P2-201ENST00000605553 359 ntBASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AC008873.1-201ENST00000625051 138 ntBASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AC018529.3-201ENST00000624212 2254 ntBASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 ZNF204P-201ENST00000416749 2397 ntBASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.9□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC4.9□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 SNORA63.4-201ENST00000362763 126 ntBASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RNU6-336P-201ENST00000364891 107 ntBASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RNU6-741P-201ENST00000383889 107 ntBASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 SNORA54-201ENST00000384281 123 ntBASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 SNORA68.2-201ENST00000391263 128 ntBASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 HLFP1-201ENST00000402375 499 ntBASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RPS26P47-201ENST00000427219 348 ntBASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AL512844.2-201ENST00000433990 593 ntBASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RPL23AP3-201ENST00000453844 468 ntBASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 CYCSP26-201ENST00000534107 320 ntBASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 MIR4679-2-201ENST00000578358 77 ntBASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC002545.1-201ENST00000592511 181 ntBASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC005176.2-201ENST00000596933 147 ntBASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AL161798.1-201ENST00000604630 131 ntBASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 Y_RNA.802-201ENST00000614892 130 ntBASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC005296.1-201ENST00000616145 209 ntBASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC009541.1-201ENST00000438279 2662 ntBASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.89□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RNU6-1249P-201ENST00000363237 111 ntBASIC4.89□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RNA5SP51-201ENST00000364750 119 ntBASIC4.89□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RNU6-541P-201ENST00000384709 110 ntBASIC4.89□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AL357075.1-201ENST00000404107 726 ntBASIC4.89□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 SNORA3.3-201ENST00000408712 125 ntBASIC4.89□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC005326.1-201ENST00000429197 123 ntBASIC4.89□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC025750.2-201ENST00000442609 450 ntBASIC4.89□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC005042.3-201ENST00000453230 174 ntBASIC4.89□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 TUG1_4.1-201ENST00000619464 181 ntBASIC4.89□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.89□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 U4.6-201ENST00000621618 127 ntBASIC4.89□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 U4.7-201ENST00000638126 106 ntBASIC4.89□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.89□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 OTUD4P1-201ENST00000237841 3067 ntBASIC4.88□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC058791.1-201ENST00000608412 3198 ntBASIC4.88□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RNU6-961P-201ENST00000363893 105 ntBASIC4.88□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RNU6-275P-201ENST00000364910 107 ntBASIC4.88□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 RNU4-11P-201ENST00000365287 132 ntBASIC4.88□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 EBAG9P1-201ENST00000418955 543 ntBASIC4.88□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC4.88□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AL591419.1-201ENST00000427423 339 ntBASIC4.88□□□□□ -1.63
SENP3-EIF4A1A0A087X0R7 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 196.1 ms