Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
EPHB3P54753 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.79□□□□□ -1.8
EPHB3P54753 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.79□□□□□ -1.8
EPHB3P54753 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.79□□□□□ -1.8
EPHB3P54753 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.79□□□□□ -1.8
EPHB3P54753 RNU6-222P-201ENST00000362438 107 ntBASIC3.79□□□□□ -1.8
EPHB3P54753 Y_RNA.286-201ENST00000364813 102 ntBASIC3.79□□□□□ -1.8
EPHB3P54753 Y_RNA.304-201ENST00000365011 112 ntBASIC3.79□□□□□ -1.8
EPHB3P54753 Y_RNA.435-201ENST00000384095 112 ntBASIC3.79□□□□□ -1.8
EPHB3P54753 RNU6-318P-201ENST00000384283 103 ntBASIC3.79□□□□□ -1.8
EPHB3P54753 RNU6-804P-201ENST00000384286 107 ntBASIC3.79□□□□□ -1.8
EPHB3P54753 RNU6-166P-201ENST00000384371 107 ntBASIC3.79□□□□□ -1.8
EPHB3P54753 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
EPHB3P54753 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.79□□□□□ -1.8
EPHB3P54753 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.79□□□□□ -1.8
EPHB3P54753 RPL32P34-201ENST00000486380 400 ntBASIC3.79□□□□□ -1.8
EPHB3P54753 SCARNA15.2-201ENST00000516409 127 ntBASIC3.79□□□□□ -1.8
EPHB3P54753 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.79□□□□□ -1.8
EPHB3P54753 MRPS18CP4-201ENST00000535821 231 ntBASIC3.79□□□□□ -1.8
EPHB3P54753 AK6P2-201ENST00000549020 471 ntBASIC3.79□□□□□ -1.8
EPHB3P54753 AC110741.2-201ENST00000605278 268 ntBASIC3.79□□□□□ -1.8
EPHB3P54753 AL365265.1-201ENST00000621045 234 ntBASIC3.79□□□□□ -1.8
EPHB3P54753 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.79□□□□□ -1.8
EPHB3P54753 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
EPHB3P54753 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
EPHB3P54753 AC073346.2-201ENST00000624724 2058 ntBASIC3.79□□□□□ -1.8
EPHB3P54753 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
EPHB3P54753 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
EPHB3P54753 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
EPHB3P54753 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
EPHB3P54753 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
EPHB3P54753 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
EPHB3P54753 Y_RNA.8-201ENST00000362353 102 ntBASIC3.78□□□□□ -1.8
EPHB3P54753 SNORD115-32-201ENST00000364079 82 ntBASIC3.78□□□□□ -1.8
EPHB3P54753 RNU5E-7P-201ENST00000365290 117 ntBASIC3.78□□□□□ -1.8
EPHB3P54753 RNVU1-14-201ENST00000384770 164 ntBASIC3.78□□□□□ -1.8
EPHB3P54753 MIR1183-201ENST00000408856 89 ntBASIC3.78□□□□□ -1.8
EPHB3P54753 Y_RNA.590-201ENST00000410140 107 ntBASIC3.78□□□□□ -1.8
EPHB3P54753 RNU6-651P-201ENST00000411040 105 ntBASIC3.78□□□□□ -1.8
EPHB3P54753 RNU2-61P-201ENST00000411069 191 ntBASIC3.78□□□□□ -1.8
EPHB3P54753 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC3.78□□□□□ -1.8
EPHB3P54753 AL160314.1-201ENST00000490836 438 ntBASIC3.78□□□□□ -1.8
EPHB3P54753 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.78□□□□□ -1.8
EPHB3P54753 SNORA31.18-201ENST00000517043 134 ntBASIC3.78□□□□□ -1.8
EPHB3P54753 SNORA31.19-201ENST00000517079 126 ntBASIC3.78□□□□□ -1.8
EPHB3P54753 RNU6-1073P-201ENST00000517182 106 ntBASIC3.78□□□□□ -1.8
EPHB3P54753 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC3.78□□□□□ -1.8
EPHB3P54753 ATP5F1P5-201ENST00000526403 760 ntBASIC3.78□□□□□ -1.8
EPHB3P54753 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.78□□□□□ -1.8
EPHB3P54753 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.78□□□□□ -1.8
EPHB3P54753 AC233981.2-201ENST00000611524 1614 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
EPHB3P54753 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.77□□□□□ -1.81
EPHB3P54753 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.77□□□□□ -1.81
EPHB3P54753 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
EPHB3P54753 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.77□□□□□ -1.81
EPHB3P54753 DEFB108F-201ENST00000344638 222 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 UBE2WP1-201ENST00000362030 340 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 RNU6-600P-201ENST00000362524 99 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 Y_RNA.245-201ENST00000364493 95 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 RNU6-1117P-201ENST00000384525 104 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 Y_RNA.569-201ENST00000384749 103 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 MIR490-201ENST00000384865 128 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 RNA5SP213-201ENST00000391031 106 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 RNU1-139P-201ENST00000391307 165 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 RPS4XP3-201ENST00000398541 413 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 AL138878.1-201ENST00000405131 347 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.77□□□□□ -1.81
EPHB3P54753 AC079780.1-201ENST00000428259 207 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 AC009296.1-201ENST00000443146 155 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 AC016700.2-201ENST00000446011 156 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 RBMY2UP-201ENST00000453474 324 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.77□□□□□ -1.81
EPHB3P54753 Y_RNA.638-201ENST00000459374 113 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 AP001324.2-201ENST00000461163 319 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 AL049830.2-201ENST00000480072 201 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.77□□□□□ -1.81
EPHB3P54753 RPS26P15-201ENST00000488067 348 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 SNORA70.18-201ENST00000516696 98 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 SNORA70.24-201ENST00000517233 118 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.77□□□□□ -1.81
EPHB3P54753 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.77□□□□□ -1.81
EPHB3P54753 AC027288.2-201ENST00000553028 243 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.77□□□□□ -1.81
EPHB3P54753 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.77□□□□□ -1.81
EPHB3P54753 MIR3690-201ENST00000580266 75 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.77□□□□□ -1.81
EPHB3P54753 AC108706.1-201ENST00000611053 297 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 RMST_6.1-201ENST00000611980 203 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 AP003355.3-201ENST00000623465 114 ntBASIC3.77□□□□□ -1.81
EPHB3P54753 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
EPHB3P54753 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
EPHB3P54753 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.77□□□□□ -1.81
EPHB3P54753 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
EPHB3P54753 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.77□□□□□ -1.81
EPHB3P54753 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.76□□□□□ -1.81
EPHB3P54753 AL133383.2-201ENST00000622958 2336 ntBASIC3.76□□□□□ -1.81
EPHB3P54753 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.76□□□□□ -1.81
EPHB3P54753 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 166.7 ms