Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 SNORA25.11-201ENST00000515935 105 ntBASIC1.53□□□□□ -2.16
SCN4AP35499 AL158211.1-201ENST00000566763 763 ntBASIC1.53□□□□□ -2.16
SCN4AP35499 NIFKP6-201ENST00000598115 845 ntBASIC1.53□□□□□ -2.16
SCN4AP35499 AL161722.3-201ENST00000605789 2983 ntBASIC1.53□□□□□ -2.16
SCN4AP35499 MIR98-201ENST00000606724 119 ntBASIC1.53□□□□□ -2.16
SCN4AP35499 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC1.53□□□□□ -2.16
SCN4AP35499 AC138649.3-201ENST00000622154 254 ntBASIC1.53□□□□□ -2.16
SCN4AP35499 Z69908.1-201ENST00000622603 247 ntBASIC1.53□□□□□ -2.16
SCN4AP35499 AP000648.3-201ENST00000623539 4507 ntBASIC1.53□□□□□ -2.16
SCN4AP35499 SNORD114-19-201ENST00000363072 75 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 U3.4-201ENST00000363352 213 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 RNU6-1097P-201ENST00000363586 107 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 RNA5SP125-201ENST00000364843 120 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 RNU6-641P-201ENST00000384006 107 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 RNU6-517P-201ENST00000384362 110 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 Y_RNA.576-201ENST00000384781 102 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 RNU6-293P-201ENST00000411259 106 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 RNU6-387P-201ENST00000411331 105 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 EDDM3CP-201ENST00000415977 425 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.52□□□□□ -2.17
SCN4AP35499 RPS3AP44-201ENST00000425466 790 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC1.52□□□□□ -2.17
SCN4AP35499 RPS15AP9-201ENST00000439856 381 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 AC079448.1-201ENST00000449377 373 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC1.52□□□□□ -2.17
SCN4AP35499 ARL2BPP4-201ENST00000506854 471 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC1.52□□□□□ -2.17
SCN4AP35499 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.52□□□□□ -2.17
SCN4AP35499 RNU6-677P-201ENST00000516914 101 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 OR5B19P-201ENST00000531766 928 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC1.52□□□□□ -2.17
SCN4AP35499 MIR4528-201ENST00000577763 90 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 AC008521.1-201ENST00000587471 187 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 Z84480.1-201ENST00000605131 311 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 AC005332.10-201ENST00000612725 619 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC1.52□□□□□ -2.17
SCN4AP35499 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC1.52□□□□□ -2.17
SCN4AP35499 AC099654.13-201ENST00000639774 207 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.52□□□□□ -2.17
SCN4AP35499 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
SCN4AP35499 SNORA38-201ENST00000363946 132 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 RNY4P16-201ENST00000364768 94 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 RNU1-133P-201ENST00000364867 167 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 Y_RNA.324-201ENST00000365165 102 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 SNORA20.2-201ENST00000383922 131 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 RNU6-1083P-201ENST00000384022 107 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 RNU6-116P-201ENST00000384042 109 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 SNORA26.8-201ENST00000391306 124 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 RPS3AP36-201ENST00000398190 775 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 RN7SKP158-201ENST00000410453 326 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC1.52□□□□□ -2.17
SCN4AP35499 AC007098.1-201ENST00000420122 367 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 AL160275.3-201ENST00000423876 471 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 AL161788.1-201ENST00000441805 169 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC1.52□□□□□ -2.17
SCN4AP35499 ART2BP-201ENST00000453501 499 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 MTCO2P6-201ENST00000463134 685 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC1.52□□□□□ -2.17
SCN4AP35499 SNORA31.6-201ENST00000516241 130 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.52□□□□□ -2.17
SCN4AP35499 AL713866.2-201ENST00000603579 219 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 AC073413.2-201ENST00000604332 360 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC1.52□□□□□ -2.17
SCN4AP35499 AC012409.4-201ENST00000612923 249 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 AL603755.1-201ENST00000619504 163 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 AL159153.1-201ENST00000619688 317 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.52□□□□□ -2.17
SCN4AP35499 AL603839.4-201ENST00000624658 1005 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 U6.99-201ENST00000637524 83 ntBASIC1.52□□□□□ -2.17
SCN4AP35499 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
SCN4AP35499 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.51□□□□□ -2.17
SCN4AP35499 RNU5E-1-201ENST00000362477 120 ntBASIC1.51□□□□□ -2.17
SCN4AP35499 MIR561-201ENST00000385216 97 ntBASIC1.51□□□□□ -2.17
SCN4AP35499 RNU2-23P-201ENST00000410545 195 ntBASIC1.51□□□□□ -2.17
SCN4AP35499 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC1.51□□□□□ -2.17
SCN4AP35499 AC073614.1-201ENST00000438690 650 ntBASIC1.51□□□□□ -2.17
SCN4AP35499 GPM6BP3-201ENST00000442797 145 ntBASIC1.51□□□□□ -2.17
SCN4AP35499 AC079781.2-201ENST00000446424 169 ntBASIC1.51□□□□□ -2.17
SCN4AP35499 OFD1P4Y-201ENST00000455273 1179 ntBASIC1.51□□□□□ -2.17
SCN4AP35499 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC1.51□□□□□ -2.17
SCN4AP35499 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.51□□□□□ -2.17
SCN4AP35499 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC1.51□□□□□ -2.17
SCN4AP35499 POC1B-211ENST00000549504 581 ntTSL 5 BASIC1.51□□□□□ -2.17
SCN4AP35499 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC1.51□□□□□ -2.17
SCN4AP35499 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC1.51□□□□□ -2.17
SCN4AP35499 AL589743.7-201ENST00000612637 233 ntBASIC1.51□□□□□ -2.17
SCN4AP35499 AP000770.2-201ENST00000623694 100 ntBASIC1.51□□□□□ -2.17
SCN4AP35499 AC124864.2-201ENST00000624736 186 ntBASIC1.51□□□□□ -2.17
SCN4AP35499 Z75746.1-201ENST00000440243 2080 ntBASIC1.51□□□□□ -2.17
SCN4AP35499 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC1.5□□□□□ -2.17
SCN4AP35499 BX295541.1-201ENST00000417774 250 ntBASIC1.5□□□□□ -2.17
SCN4AP35499 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC1.5□□□□□ -2.17
SCN4AP35499 AC093106.2-201ENST00000428212 385 ntBASIC1.5□□□□□ -2.17
SCN4AP35499 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC1.5□□□□□ -2.17
SCN4AP35499 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.5□□□□□ -2.17
SCN4AP35499 HMGB1P30-201ENST00000492455 606 ntBASIC1.5□□□□□ -2.17
SCN4AP35499 MRPS17P9-201ENST00000511924 393 ntBASIC1.5□□□□□ -2.17
SCN4AP35499 RNU6-410P-201ENST00000517006 107 ntBASIC1.5□□□□□ -2.17
SCN4AP35499 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.5□□□□□ -2.17
SCN4AP35499 AC105245.1-201ENST00000581934 244 ntBASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 285.7 ms