Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 AC103996.1-201ENST00000555468 102 ntBASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 AC007224.1-201ENST00000564410 144 ntBASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 MIR5047-201ENST00000579212 100 ntBASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 AC112200.1-201ENST00000625015 234 ntBASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 RNA5SP196-201ENST00000625967 102 ntBASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 Y_RNA.215-201ENST00000364204 112 ntBASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 RNU6-449P-201ENST00000383914 107 ntBASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 RNU6-926P-201ENST00000384075 107 ntBASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 PPIAP31-201ENST00000405422 495 ntBASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 AL117339.3-201ENST00000418733 162 ntBASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 SNORA71B-202ENST00000439232 272 ntBASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 SNORD2.1-201ENST00000458762 69 ntBASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 RPS29P27-201ENST00000463711 170 ntBASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 AC010285.1-201ENST00000470580 392 ntBASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 SRI-210ENST00000490437 570 ntTSL 2 BASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 RN7SL323P-201ENST00000494712 295 ntBASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 RAC1P2-201ENST00000511164 579 ntBASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 RNU6-426P-201ENST00000516464 97 ntBASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 CYCSP30-201ENST00000546447 172 ntBASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 TGIF1P1-201ENST00000558095 802 ntBASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 MIR3186-201ENST00000577404 85 ntBASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 MIR4286-201ENST00000580651 93 ntBASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 AC073349.3-201ENST00000617616 186 ntBASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 IGHVIII-44-202ENST00000636235 289 ntBASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 AL109809.4-201ENST00000603520 2185 ntBASIC4.27□□□□□ -1.73
CCDC39Q9UFE4 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 RNU6-600P-201ENST00000362524 99 ntBASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 U1.1-201ENST00000384101 164 ntBASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 RNU6-514P-201ENST00000384208 107 ntBASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 MIR186-201ENST00000384988 86 ntBASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 RNU6-257P-201ENST00000410238 98 ntBASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 SSXP9-201ENST00000417503 292 ntBASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 TOMM22P1-201ENST00000418578 312 ntBASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 TRAPPC2P4-201ENST00000421750 331 ntBASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 AL592045.1-201ENST00000429867 352 ntBASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 TOMM22P6-201ENST00000465035 409 ntBASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 AC091959.1-201ENST00000495857 238 ntBASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 RNU6-1073P-201ENST00000517182 106 ntBASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 RNU6-840P-201ENST00000517275 65 ntBASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 AC011602.1-201ENST00000546484 331 ntBASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 AC073073.2-201ENST00000609827 2578 ntBASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 AC058791.1-201ENST00000608412 3198 ntBASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC39Q9UFE4 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 RNU6-384P-201ENST00000364900 104 ntBASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 RNU6-21P-201ENST00000384710 107 ntBASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 RPL21P66-201ENST00000426566 466 ntBASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 CR769767.1-201ENST00000436337 346 ntBASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 RPL23AP45-201ENST00000476406 468 ntBASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 APOOP4-201ENST00000513530 597 ntBASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 RNA5SP208-201ENST00000516156 78 ntBASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 SNORA27.4-201ENST00000516650 95 ntBASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 RNU6-1315P-201ENST00000517187 99 ntBASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 MIR1273C-201ENST00000578669 77 ntBASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 AC053481.4-201ENST00000583164 216 ntBASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 SRGNP1-201ENST00000603392 451 ntBASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 SNORA62.6-201ENST00000606322 83 ntBASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 MIR6875-201ENST00000617506 72 ntBASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 AC092628.2-201ENST00000622492 339 ntBASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 MIR4275-201ENST00000636486 87 ntBASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 USP8P1-201ENST00000494673 3183 ntBASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 AL021368.2-201ENST00000606125 5352 ntBASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC39Q9UFE4 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC39Q9UFE4 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC4.24□□□□□ -1.73
CCDC39Q9UFE4 RNU6-222P-201ENST00000362438 107 ntBASIC4.24□□□□□ -1.73
CCDC39Q9UFE4 Y_RNA.123-201ENST00000363338 102 ntBASIC4.24□□□□□ -1.73
CCDC39Q9UFE4 RNU6-1155P-201ENST00000363554 107 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 170.4 ms