Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 TOMM22P2-201ENST00000430735 237 ntBASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 MTATP6P21-201ENST00000440681 189 ntBASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 RNA5SP315-201ENST00000516340 116 ntBASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 RNA5SP312-201ENST00000517068 116 ntBASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 Y_RNA.818-201ENST00000618813 71 ntBASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC6.18□□□□□ -1.42
CCDC61Q9Y6R9 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
CCDC61Q9Y6R9 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC61Q9Y6R9 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
CCDC61Q9Y6R9 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC6.17□□□□□ -1.42
CCDC61Q9Y6R9 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC61Q9Y6R9 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC6.17□□□□□ -1.42
CCDC61Q9Y6R9 MIR331-201ENST00000362302 94 ntBASIC6.17□□□□□ -1.42
CCDC61Q9Y6R9 RNA5SP496-201ENST00000391240 109 ntBASIC6.17□□□□□ -1.42
CCDC61Q9Y6R9 AL021397.1-201ENST00000451806 248 ntBASIC6.17□□□□□ -1.42
CCDC61Q9Y6R9 AC021205.2-201ENST00000480069 347 ntBASIC6.17□□□□□ -1.42
CCDC61Q9Y6R9 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC6.17□□□□□ -1.42
CCDC61Q9Y6R9 RNU6-1299P-201ENST00000516316 100 ntBASIC6.17□□□□□ -1.42
CCDC61Q9Y6R9 RNU6-158P-201ENST00000517104 100 ntBASIC6.17□□□□□ -1.42
CCDC61Q9Y6R9 MIR2116-201ENST00000517221 80 ntBASIC6.17□□□□□ -1.42
CCDC61Q9Y6R9 RN7SL176P-201ENST00000580352 264 ntBASIC6.17□□□□□ -1.42
CCDC61Q9Y6R9 AC079587.1-201ENST00000603846 277 ntBASIC6.17□□□□□ -1.42
CCDC61Q9Y6R9 MALAT1.1-201ENST00000618249 95 ntBASIC6.17□□□□□ -1.42
CCDC61Q9Y6R9 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC61Q9Y6R9 AC112198.2-201ENST00000426589 6996 ntBASIC6.17□□□□□ -1.42
CCDC61Q9Y6R9 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC61Q9Y6R9 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC61Q9Y6R9 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC6.16□□□□□ -1.42
CCDC61Q9Y6R9 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC61Q9Y6R9 AL589743.1-201ENST00000551932 2712 ntBASIC6.16□□□□□ -1.42
CCDC61Q9Y6R9 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC61Q9Y6R9 RNU1-13P-201ENST00000384499 162 ntBASIC6.16□□□□□ -1.42
CCDC61Q9Y6R9 MIR3065-201ENST00000390137 79 ntBASIC6.16□□□□□ -1.42
CCDC61Q9Y6R9 MIR208B-201ENST00000401172 77 ntBASIC6.16□□□□□ -1.42
CCDC61Q9Y6R9 RNA5SP136-201ENST00000410906 107 ntBASIC6.16□□□□□ -1.42
CCDC61Q9Y6R9 RPL27AP8-201ENST00000424277 446 ntBASIC6.16□□□□□ -1.42
CCDC61Q9Y6R9 AC012671.1-201ENST00000451912 203 ntBASIC6.16□□□□□ -1.42
CCDC61Q9Y6R9 PARP4P3-201ENST00000510265 317 ntBASIC6.16□□□□□ -1.42
CCDC61Q9Y6R9 RNA5SP395-201ENST00000516567 118 ntBASIC6.16□□□□□ -1.42
CCDC61Q9Y6R9 AL591034.3-201ENST00000605511 685 ntBASIC6.16□□□□□ -1.42
CCDC61Q9Y6R9 SNORD11B-201ENST00000607707 90 ntBASIC6.16□□□□□ -1.42
CCDC61Q9Y6R9 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC6.16□□□□□ -1.42
CCDC61Q9Y6R9 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC61Q9Y6R9 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC61Q9Y6R9 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 MFSD8-242ENST00000641690 4199 ntBASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 AC107027.3-201ENST00000565095 3473 ntBASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 MUC2-202ENST00000613187 4845 ntBASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 Y_RNA.361-201ENST00000365515 120 ntBASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 AL365496.1-201ENST00000426885 215 ntBASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 RPS26P47-201ENST00000427219 348 ntBASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 NDUFS5P3-201ENST00000450668 321 ntBASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 AC026421.1-201ENST00000519101 163 ntBASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 CKS1BP7-201ENST00000522230 235 ntBASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 AC106785.1-201ENST00000565935 262 ntBASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 AC025281.1-201ENST00000567026 265 ntBASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 AC015912.2-201ENST00000571053 181 ntBASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 AC136601.2-201ENST00000604356 474 ntBASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 U6.115-201ENST00000636045 103 ntBASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
CCDC61Q9Y6R9 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC6.15□□□□□ -1.43
CCDC61Q9Y6R9 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC6.15□□□□□ -1.43
CCDC61Q9Y6R9 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC61Q9Y6R9 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 OR51H2P-202ENST00000641424 3046 ntBASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 Y_RNA.244-201ENST00000364484 109 ntBASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 RNU6-484P-201ENST00000384016 107 ntBASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 U3.26-201ENST00000391236 204 ntBASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 AL590004.2-201ENST00000404787 371 ntBASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 MIR1255A-201ENST00000408338 113 ntBASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 REREP1Y-201ENST00000422655 198 ntBASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 AC005300.1-201ENST00000428401 373 ntBASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 MTATP8P2-201ENST00000435212 202 ntBASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 Z75741.1-201ENST00000446793 314 ntBASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 AC103975.1-201ENST00000482506 483 ntBASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 193.9 ms