Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MIR135A2-201ENST00000384854 100 ntBASIC4.34□□□□□ -1.71
CCDC39Q9UFE4 RNU5E-9P-201ENST00000411164 104 ntBASIC4.34□□□□□ -1.71
CCDC39Q9UFE4 AL096701.2-201ENST00000416920 238 ntBASIC4.34□□□□□ -1.71
CCDC39Q9UFE4 HIGD1AP2-201ENST00000446367 280 ntBASIC4.34□□□□□ -1.71
CCDC39Q9UFE4 AC034236.1-201ENST00000469891 373 ntBASIC4.34□□□□□ -1.71
CCDC39Q9UFE4 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC4.34□□□□□ -1.71
CCDC39Q9UFE4 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC39Q9UFE4 MIR2116-201ENST00000517221 80 ntBASIC4.34□□□□□ -1.71
CCDC39Q9UFE4 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC39Q9UFE4 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC39Q9UFE4 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC39Q9UFE4 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC39Q9UFE4 PARP1P2-201ENST00000556806 195 ntBASIC4.34□□□□□ -1.71
CCDC39Q9UFE4 AL450472.3-201ENST00000615578 367 ntBASIC4.34□□□□□ -1.71
CCDC39Q9UFE4 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC4.34□□□□□ -1.71
CCDC39Q9UFE4 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.34□□□□□ -1.72
CCDC39Q9UFE4 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 Y_RNA.82-201ENST00000363000 102 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 Y_RNA.92-201ENST00000363043 102 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 RNA5SP443-201ENST00000363083 132 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 U3.6-201ENST00000363622 211 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 Y_RNA.235-201ENST00000364412 102 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 RNU6-153P-201ENST00000364422 104 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 RN7SKP227-201ENST00000364445 330 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 SNORA7.2-201ENST00000364446 145 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 SNORA70.2-201ENST00000364506 135 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 Y_RNA.272-201ENST00000364696 102 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 Y_RNA.306-201ENST00000365015 102 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 Y_RNA.312-201ENST00000365089 102 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 Y_RNA.322-201ENST00000365151 102 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 AL117339.2-201ENST00000430475 180 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 HMGB1P27-201ENST00000431429 603 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 Y_RNA.650-201ENST00000459002 102 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 ANXA2P1-201ENST00000505539 926 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 RNA5SP164-201ENST00000516533 110 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 Y_RNA.706-201ENST00000516933 99 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 Y_RNA.777-201ENST00000516982 102 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 MIR4308-201ENST00000580634 81 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 Y_RNA.771-201ENST00000598668 102 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 AL606490.9-201ENST00000603331 271 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 AC037487.3-201ENST00000606668 112 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 Y_RNA.789-201ENST00000622480 102 ntBASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC39Q9UFE4 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 RNU6-37P-201ENST00000362692 107 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 RNU6-1301P-201ENST00000362724 104 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 RNU6-11P-201ENST00000364234 107 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 RNA5SP205-201ENST00000364653 136 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 RNU6-7-201ENST00000364784 107 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 Y_RNA.308-201ENST00000365043 101 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 RNA5SP235-201ENST00000365411 114 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 RNU6-8-201ENST00000365467 107 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 RNU6-827P-201ENST00000365553 106 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 RNU6-25P-201ENST00000383873 107 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 RNU6-1-201ENST00000383898 107 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 RNU6-629P-201ENST00000384061 103 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 RNU6-36P-201ENST00000384172 107 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 RNU6-4P-201ENST00000384205 107 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 RNU6-5P-201ENST00000384238 107 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 RNU6-3P-201ENST00000384314 107 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 RNU6-16P-201ENST00000384385 107 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 Y_RNA.488-201ENST00000384403 102 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 RNU6-15P-201ENST00000384534 107 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 RNU6-2-201ENST00000384627 107 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 RNU6-29P-201ENST00000384637 107 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 RNU6-9-201ENST00000384776 107 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 Y_RNA.625-201ENST00000411256 107 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 AL358453.1-201ENST00000422522 250 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 MTCO1P39-201ENST00000426148 480 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 HMGB3P8-201ENST00000449709 577 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 RNU7-170P-201ENST00000459303 61 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 RNU2-58P-201ENST00000516403 183 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 MIR892C-201ENST00000516410 77 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 RPL23AP78-201ENST00000599928 470 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 RNU6-6P-201ENST00000606623 107 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 SNORD113-5-201ENST00000607261 78 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 MIR7153-201ENST00000637758 57 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 PWAR6-201ENST00000552334 4618 ntBASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
CCDC39Q9UFE4 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.31□□□□□ -1.72
CCDC39Q9UFE4 AC004925.1-201ENST00000624256 2706 ntBASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 182.6 ms