Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 RNU6-660P-201ENST00000364566 109 ntBASIC1.61□□□□□ -2.15
SCN4AP35499 AC127391.1-201ENST00000411737 98 ntBASIC1.61□□□□□ -2.15
SCN4AP35499 AL109913.1-201ENST00000421173 514 ntBASIC1.61□□□□□ -2.15
SCN4AP35499 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC1.61□□□□□ -2.15
SCN4AP35499 snoU109.1-201ENST00000459339 135 ntBASIC1.61□□□□□ -2.15
SCN4AP35499 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC1.61□□□□□ -2.15
SCN4AP35499 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
SCN4AP35499 AC105417.1-201ENST00000514691 285 ntBASIC1.61□□□□□ -2.15
SCN4AP35499 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC1.61□□□□□ -2.15
SCN4AP35499 AL121821.2-201ENST00000556081 394 ntBASIC1.61□□□□□ -2.15
SCN4AP35499 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC1.61□□□□□ -2.15
SCN4AP35499 AL133173.2-201ENST00000614270 90 ntBASIC1.61□□□□□ -2.15
SCN4AP35499 AC011155.2-201ENST00000623202 216 ntBASIC1.61□□□□□ -2.15
SCN4AP35499 AC008993.2-201ENST00000631744 806 ntBASIC1.61□□□□□ -2.15
SCN4AP35499 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
SCN4AP35499 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC1.61□□□□□ -2.15
SCN4AP35499 RNY3P9-201ENST00000384727 106 ntBASIC1.61□□□□□ -2.15
SCN4AP35499 RNU2-3P-201ENST00000410144 191 ntBASIC1.61□□□□□ -2.15
SCN4AP35499 SEPT2P1-201ENST00000419651 180 ntBASIC1.61□□□□□ -2.15
SCN4AP35499 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC1.61□□□□□ -2.15
SCN4AP35499 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC1.61□□□□□ -2.15
SCN4AP35499 AL441985.1-201ENST00000457727 251 ntBASIC1.61□□□□□ -2.15
SCN4AP35499 AC112771.1-201ENST00000463581 102 ntBASIC1.61□□□□□ -2.15
SCN4AP35499 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC1.61□□□□□ -2.15
SCN4AP35499 AC105252.1-201ENST00000503089 286 ntBASIC1.61□□□□□ -2.15
SCN4AP35499 AC117522.1-201ENST00000509821 380 ntBASIC1.61□□□□□ -2.15
SCN4AP35499 MRPS33P3-201ENST00000513456 322 ntBASIC1.61□□□□□ -2.15
SCN4AP35499 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
SCN4AP35499 UBE2Q2P8-201ENST00000560644 102 ntBASIC1.61□□□□□ -2.15
SCN4AP35499 AC145350.1-201ENST00000567426 208 ntBASIC1.61□□□□□ -2.15
SCN4AP35499 AC104010.1-201ENST00000616889 150 ntBASIC1.61□□□□□ -2.15
SCN4AP35499 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.61□□□□□ -2.15
SCN4AP35499 AC073308.1-201ENST00000623696 305 ntBASIC1.61□□□□□ -2.15
SCN4AP35499 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.61□□□□□ -2.15
SCN4AP35499 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
SCN4AP35499 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC1.6□□□□□ -2.15
SCN4AP35499 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC1.6□□□□□ -2.15
SCN4AP35499 DLEU2_6.3-201ENST00000340052 136 ntBASIC1.6□□□□□ -2.15
SCN4AP35499 RNU6-181P-201ENST00000363225 107 ntBASIC1.6□□□□□ -2.15
SCN4AP35499 RNU5F-7P-201ENST00000363696 115 ntBASIC1.6□□□□□ -2.15
SCN4AP35499 Y_RNA.169-201ENST00000363745 96 ntBASIC1.6□□□□□ -2.15
SCN4AP35499 RNU6-371P-201ENST00000364283 108 ntBASIC1.6□□□□□ -2.15
SCN4AP35499 RNU6-1029P-201ENST00000384109 107 ntBASIC1.6□□□□□ -2.15
SCN4AP35499 MIR518D-201ENST00000385014 87 ntBASIC1.6□□□□□ -2.15
SCN4AP35499 AC096649.2-201ENST00000416186 393 ntBASIC1.6□□□□□ -2.15
SCN4AP35499 MTCYBP5-201ENST00000423752 1135 ntBASIC1.6□□□□□ -2.15
SCN4AP35499 PTGES3P4-201ENST00000426243 356 ntBASIC1.6□□□□□ -2.15
SCN4AP35499 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC1.6□□□□□ -2.15
SCN4AP35499 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC1.6□□□□□ -2.15
SCN4AP35499 AC132479.1-201ENST00000449160 144 ntBASIC1.6□□□□□ -2.15
SCN4AP35499 KATNBL1P6-201ENST00000453433 915 ntBASIC1.6□□□□□ -2.15
SCN4AP35499 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC1.6□□□□□ -2.15
SCN4AP35499 AC107626.1-201ENST00000471084 183 ntBASIC1.6□□□□□ -2.15
SCN4AP35499 AP000797.1-201ENST00000478870 387 ntBASIC1.6□□□□□ -2.15
SCN4AP35499 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC1.6□□□□□ -2.15
SCN4AP35499 RNU6-445P-201ENST00000516949 107 ntBASIC1.6□□□□□ -2.15
SCN4AP35499 RNA5SP165-201ENST00000517142 115 ntBASIC1.6□□□□□ -2.15
SCN4AP35499 SCARNA11.3-201ENST00000517276 130 ntBASIC1.6□□□□□ -2.15
SCN4AP35499 AP005435.4-201ENST00000529514 284 ntBASIC1.6□□□□□ -2.15
SCN4AP35499 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC1.6□□□□□ -2.15
SCN4AP35499 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.6□□□□□ -2.15
SCN4AP35499 AL391840.1-201ENST00000571144 367 ntBASIC1.6□□□□□ -2.15
SCN4AP35499 AC024619.4-201ENST00000580924 316 ntBASIC1.6□□□□□ -2.15
SCN4AP35499 AC087045.1-201ENST00000605856 382 ntBASIC1.6□□□□□ -2.15
SCN4AP35499 DLEU2_6.2-201ENST00000620994 136 ntBASIC1.6□□□□□ -2.15
SCN4AP35499 AL390237.1-201ENST00000404226 1415 ntBASIC1.59□□□□□ -2.15
SCN4AP35499 RNU6-188P-201ENST00000364207 107 ntBASIC1.59□□□□□ -2.15
SCN4AP35499 MIR222-201ENST00000384992 110 ntBASIC1.59□□□□□ -2.15
SCN4AP35499 RPL26P27-201ENST00000414397 437 ntBASIC1.59□□□□□ -2.15
SCN4AP35499 CYCSP46-201ENST00000423569 204 ntBASIC1.59□□□□□ -2.15
SCN4AP35499 USP9YP18-201ENST00000425912 695 ntBASIC1.59□□□□□ -2.15
SCN4AP35499 AC007560.1-201ENST00000426912 237 ntBASIC1.59□□□□□ -2.15
SCN4AP35499 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.59□□□□□ -2.15
SCN4AP35499 AC009961.2-201ENST00000435771 251 ntBASIC1.59□□□□□ -2.15
SCN4AP35499 AL078601.1-201ENST00000444542 271 ntBASIC1.59□□□□□ -2.15
SCN4AP35499 AL360221.1-201ENST00000445989 335 ntBASIC1.59□□□□□ -2.15
SCN4AP35499 FABP5P15-201ENST00000453566 214 ntBASIC1.59□□□□□ -2.15
SCN4AP35499 BTF3P15-201ENST00000455606 336 ntBASIC1.59□□□□□ -2.15
SCN4AP35499 MTCO2P29-201ENST00000465212 189 ntBASIC1.59□□□□□ -2.15
SCN4AP35499 RPS27AP10-201ENST00000496103 208 ntBASIC1.59□□□□□ -2.15
SCN4AP35499 AC112204.1-201ENST00000502591 103 ntBASIC1.59□□□□□ -2.15
SCN4AP35499 AC109927.2-201ENST00000506416 303 ntBASIC1.59□□□□□ -2.15
SCN4AP35499 AP003072.2-201ENST00000527756 676 ntBASIC1.59□□□□□ -2.15
SCN4AP35499 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC1.59□□□□□ -2.15
SCN4AP35499 AL391813.1-201ENST00000603098 260 ntBASIC1.59□□□□□ -2.15
SCN4AP35499 AL353778.1-201ENST00000603149 408 ntBASIC1.59□□□□□ -2.15
SCN4AP35499 AL359999.1-201ENST00000604513 294 ntBASIC1.59□□□□□ -2.15
SCN4AP35499 AL360219.1-201ENST00000610230 366 ntBASIC1.59□□□□□ -2.15
SCN4AP35499 AC092192.1-201ENST00000633154 1018 ntBASIC1.59□□□□□ -2.15
SCN4AP35499 RNU5E-5P-201ENST00000365379 116 ntBASIC1.59□□□□□ -2.16
SCN4AP35499 RNU6-622P-201ENST00000384272 103 ntBASIC1.59□□□□□ -2.16
SCN4AP35499 SNORA40.3-201ENST00000390964 122 ntBASIC1.59□□□□□ -2.16
SCN4AP35499 SNORD23.1-201ENST00000408212 104 ntBASIC1.59□□□□□ -2.16
SCN4AP35499 RPS3AP3-201ENST00000411933 242 ntBASIC1.59□□□□□ -2.16
SCN4AP35499 SKA2P1-201ENST00000425592 390 ntBASIC1.59□□□□□ -2.16
SCN4AP35499 MTCO3P5-201ENST00000433620 714 ntBASIC1.59□□□□□ -2.16
SCN4AP35499 AL512844.2-201ENST00000433990 593 ntBASIC1.59□□□□□ -2.16
SCN4AP35499 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC1.59□□□□□ -2.16
SCN4AP35499 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC1.59□□□□□ -2.16
SCN4AP35499 DUXAP5-201ENST00000529668 529 ntBASIC1.59□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 248.9 ms