Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MIR4782-201ENST00000577987 79 ntBASIC1.42□□□□□ -2.18
SHANK3Q9BYB0 AL158042.1-201ENST00000605338 460 ntBASIC1.42□□□□□ -2.18
SHANK3Q9BYB0 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC1.42□□□□□ -2.18
SHANK3Q9BYB0 AP001486.3-201ENST00000615334 372 ntBASIC1.42□□□□□ -2.18
SHANK3Q9BYB0 AC021755.4-201ENST00000616620 456 ntBASIC1.42□□□□□ -2.18
SHANK3Q9BYB0 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
SHANK3Q9BYB0 MIR5739-201ENST00000619803 80 ntBASIC1.42□□□□□ -2.18
SHANK3Q9BYB0 AP003400.5-201ENST00000624827 617 ntBASIC1.42□□□□□ -2.18
SHANK3Q9BYB0 MTND4P12-201ENST00000498999 1377 ntBASIC1.42□□□□□ -2.18
SHANK3Q9BYB0 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 RNU6-288P-201ENST00000363690 104 ntBASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 CISD1P1-201ENST00000393907 327 ntBASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 AL139397.2-201ENST00000404529 772 ntBASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 AL359634.1-202ENST00000404721 284 ntBASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 RPL36AP53-201ENST00000432891 316 ntBASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 AC084290.1-201ENST00000434995 374 ntBASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 CECR9-201ENST00000453421 199 ntBASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 FABP5P15-201ENST00000453566 214 ntBASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 PMCHL2-203ENST00000457791 237 ntBASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 RPL36AP48-201ENST00000485521 314 ntBASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 RNA5SP112-201ENST00000515937 99 ntBASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 AC105185.1-201ENST00000518705 535 ntBASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 AP005902.1-201ENST00000521358 186 ntBASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 MIR544B-201ENST00000582372 78 ntBASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 AC078899.2-201ENST00000595282 212 ntBASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 AL355598.1-201ENST00000604169 202 ntBASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 AL021997.1-201ENST00000605757 193 ntBASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 AL161423.1-201ENST00000613700 262 ntBASIC1.41□□□□□ -2.18
SHANK3Q9BYB0 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC1.4□□□□□ -2.18
SHANK3Q9BYB0 MIR620-201ENST00000385232 95 ntBASIC1.4□□□□□ -2.18
SHANK3Q9BYB0 RNU2-49P-201ENST00000410666 184 ntBASIC1.4□□□□□ -2.18
SHANK3Q9BYB0 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC1.4□□□□□ -2.18
SHANK3Q9BYB0 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC1.4□□□□□ -2.18
SHANK3Q9BYB0 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC1.4□□□□□ -2.18
SHANK3Q9BYB0 OARD1-209ENST00000471367 401 ntTSL 2 BASIC1.4□□□□□ -2.18
SHANK3Q9BYB0 RPL39P36-201ENST00000490784 156 ntBASIC1.4□□□□□ -2.18
SHANK3Q9BYB0 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC1.4□□□□□ -2.18
SHANK3Q9BYB0 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC1.4□□□□□ -2.18
SHANK3Q9BYB0 MRPS33P3-201ENST00000513456 322 ntBASIC1.4□□□□□ -2.18
SHANK3Q9BYB0 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC1.4□□□□□ -2.18
SHANK3Q9BYB0 RNU6ATAC13P-201ENST00000516152 131 ntBASIC1.4□□□□□ -2.18
SHANK3Q9BYB0 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC1.4□□□□□ -2.18
SHANK3Q9BYB0 AC092953.2-201ENST00000608000 699 ntBASIC1.4□□□□□ -2.18
SHANK3Q9BYB0 AC108706.1-201ENST00000611053 297 ntBASIC1.4□□□□□ -2.18
SHANK3Q9BYB0 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC1.4□□□□□ -2.18
SHANK3Q9BYB0 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC1.4□□□□□ -2.18
SHANK3Q9BYB0 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
SHANK3Q9BYB0 SNORA4.1-201ENST00000364263 144 ntBASIC1.4□□□□□ -2.19
SHANK3Q9BYB0 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC1.4□□□□□ -2.19
SHANK3Q9BYB0 ELOCP9-201ENST00000418624 239 ntBASIC1.4□□□□□ -2.19
SHANK3Q9BYB0 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC1.4□□□□□ -2.19
SHANK3Q9BYB0 RPS25P9-201ENST00000435591 252 ntBASIC1.4□□□□□ -2.19
SHANK3Q9BYB0 PTENP1-201ENST00000447117 1215 ntBASIC1.4□□□□□ -2.19
SHANK3Q9BYB0 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC1.4□□□□□ -2.19
SHANK3Q9BYB0 AC020699.1-201ENST00000505161 445 ntBASIC1.4□□□□□ -2.19
SHANK3Q9BYB0 RNU2-10P-201ENST00000516375 211 ntBASIC1.4□□□□□ -2.19
SHANK3Q9BYB0 RNU6-201P-201ENST00000517100 61 ntBASIC1.4□□□□□ -2.19
SHANK3Q9BYB0 SCARNA1-201ENST00000517138 166 ntBASIC1.4□□□□□ -2.19
SHANK3Q9BYB0 DUXAP1-201ENST00000556632 463 ntBASIC1.4□□□□□ -2.19
SHANK3Q9BYB0 AL133241.1-201ENST00000556832 487 ntBASIC1.4□□□□□ -2.19
SHANK3Q9BYB0 ROCK1P1-201ENST00000573767 549 ntBASIC1.4□□□□□ -2.19
SHANK3Q9BYB0 MIR3167-201ENST00000579623 85 ntBASIC1.4□□□□□ -2.19
SHANK3Q9BYB0 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC1.4□□□□□ -2.19
SHANK3Q9BYB0 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC1.4□□□□□ -2.19
SHANK3Q9BYB0 AC008749.1-201ENST00000597650 306 ntBASIC1.4□□□□□ -2.19
SHANK3Q9BYB0 MTND3P19-201ENST00000603825 345 ntBASIC1.4□□□□□ -2.19
SHANK3Q9BYB0 AL157392.4-201ENST00000609756 345 ntBASIC1.4□□□□□ -2.19
SHANK3Q9BYB0 U4atac.1-201ENST00000618345 95 ntBASIC1.4□□□□□ -2.19
SHANK3Q9BYB0 SNORA3A-201ENST00000364113 130 ntBASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 RNU4-42P-201ENST00000364738 142 ntBASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 SNORA40C-201ENST00000391285 128 ntBASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 AL353777.1-201ENST00000425552 326 ntBASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 AL358176.2-201ENST00000425769 204 ntBASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 AC104651.1-201ENST00000427559 735 ntBASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 RSU1P2-202ENST00000437884 485 ntBASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 AL360221.1-201ENST00000445989 335 ntBASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 USP9YP25-201ENST00000457708 443 ntBASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 AC107032.1-201ENST00000485945 480 ntBASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 SNORA31.6-201ENST00000516241 130 ntBASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 MIR892C-201ENST00000516410 77 ntBASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 RNU5A-4P-201ENST00000516588 111 ntBASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 RNU6-1003P-201ENST00000517099 105 ntBASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 RNU6-64P-201ENST00000517119 105 ntBASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 MTCO2P15-201ENST00000532655 656 ntBASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 AGGF1P5-201ENST00000567900 919 ntBASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 AC021171.1-201ENST00000603137 706 ntBASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 AL161798.1-201ENST00000604630 131 ntBASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 169.9 ms