Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 RPL23AP62-201ENST00000463396 453 ntBASIC3.8□□□□□ -1.8
KRT40Q6A162 RN7SL442P-201ENST00000473804 320 ntBASIC3.8□□□□□ -1.8
KRT40Q6A162 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.8□□□□□ -1.8
KRT40Q6A162 RPS4XP22-201ENST00000480755 780 ntBASIC3.8□□□□□ -1.8
KRT40Q6A162 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.8□□□□□ -1.8
KRT40Q6A162 MTCO2P24-201ENST00000515611 426 ntBASIC3.8□□□□□ -1.8
KRT40Q6A162 RNU6-1256P-201ENST00000516539 103 ntBASIC3.8□□□□□ -1.8
KRT40Q6A162 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
KRT40Q6A162 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.8□□□□□ -1.8
KRT40Q6A162 TRAV37-201ENST00000553906 342 ntBASIC3.8□□□□□ -1.8
KRT40Q6A162 MIR1273C-201ENST00000578669 77 ntBASIC3.8□□□□□ -1.8
KRT40Q6A162 MIR4276-201ENST00000584832 70 ntBASIC3.8□□□□□ -1.8
KRT40Q6A162 AC002545.1-201ENST00000592511 181 ntBASIC3.8□□□□□ -1.8
KRT40Q6A162 AL162713.1-201ENST00000604480 262 ntBASIC3.8□□□□□ -1.8
KRT40Q6A162 AC012531.5-201ENST00000611375 151 ntBASIC3.8□□□□□ -1.8
KRT40Q6A162 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC3.8□□□□□ -1.8
KRT40Q6A162 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.8□□□□□ -1.8
KRT40Q6A162 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.8□□□□□ -1.8
KRT40Q6A162 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
KRT40Q6A162 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
KRT40Q6A162 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.79□□□□□ -1.8
KRT40Q6A162 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
KRT40Q6A162 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.79□□□□□ -1.8
KRT40Q6A162 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
KRT40Q6A162 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
KRT40Q6A162 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
KRT40Q6A162 Y_RNA.2-201ENST00000362330 96 ntBASIC3.79□□□□□ -1.8
KRT40Q6A162 RNA5SP432-201ENST00000362480 116 ntBASIC3.79□□□□□ -1.8
KRT40Q6A162 Y_RNA.557-201ENST00000384680 107 ntBASIC3.79□□□□□ -1.8
KRT40Q6A162 AL592148.1-201ENST00000413568 445 ntBASIC3.79□□□□□ -1.8
KRT40Q6A162 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.79□□□□□ -1.8
KRT40Q6A162 AL133396.1-201ENST00000432048 687 ntBASIC3.79□□□□□ -1.8
KRT40Q6A162 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.79□□□□□ -1.8
KRT40Q6A162 RPS23P3-201ENST00000470993 430 ntBASIC3.79□□□□□ -1.8
KRT40Q6A162 AC011005.2-201ENST00000487324 359 ntBASIC3.79□□□□□ -1.8
KRT40Q6A162 RPS15AP34-201ENST00000487776 387 ntBASIC3.79□□□□□ -1.8
KRT40Q6A162 AC113155.1-201ENST00000511141 769 ntBASIC3.79□□□□□ -1.8
KRT40Q6A162 SCARNA20.6-201ENST00000517251 106 ntBASIC3.79□□□□□ -1.8
KRT40Q6A162 AC069113.1-201ENST00000517763 267 ntBASIC3.79□□□□□ -1.8
KRT40Q6A162 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.79□□□□□ -1.8
KRT40Q6A162 AC104027.1-201ENST00000521887 300 ntBASIC3.79□□□□□ -1.8
KRT40Q6A162 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.79□□□□□ -1.8
KRT40Q6A162 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
KRT40Q6A162 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC3.79□□□□□ -1.8
KRT40Q6A162 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.79□□□□□ -1.8
KRT40Q6A162 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
KRT40Q6A162 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.79□□□□□ -1.8
KRT40Q6A162 AC104695.3-201ENST00000604052 296 ntBASIC3.79□□□□□ -1.8
KRT40Q6A162 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
KRT40Q6A162 AC116096.1-201ENST00000566804 2314 ntBASIC3.79□□□□□ -1.8
KRT40Q6A162 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
KRT40Q6A162 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
KRT40Q6A162 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
KRT40Q6A162 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
KRT40Q6A162 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.78□□□□□ -1.8
KRT40Q6A162 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
KRT40Q6A162 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.8
KRT40Q6A162 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.78□□□□□ -1.8
KRT40Q6A162 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
KRT40Q6A162 Y_RNA.153-201ENST00000363615 91 ntBASIC3.78□□□□□ -1.8
KRT40Q6A162 RNU6-293P-201ENST00000411259 106 ntBASIC3.78□□□□□ -1.8
KRT40Q6A162 CST9LP2-201ENST00000437612 320 ntBASIC3.78□□□□□ -1.8
KRT40Q6A162 BTF3P15-201ENST00000455606 336 ntBASIC3.78□□□□□ -1.8
KRT40Q6A162 RPS20P22-201ENST00000473700 357 ntBASIC3.78□□□□□ -1.8
KRT40Q6A162 HMGB1P30-201ENST00000492455 606 ntBASIC3.78□□□□□ -1.8
KRT40Q6A162 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.78□□□□□ -1.8
KRT40Q6A162 AC109446.1-201ENST00000566172 220 ntBASIC3.78□□□□□ -1.8
KRT40Q6A162 MIR4672-201ENST00000583126 81 ntBASIC3.78□□□□□ -1.8
KRT40Q6A162 OR1M4P-201ENST00000589199 287 ntBASIC3.78□□□□□ -1.8
KRT40Q6A162 AL355810.1-201ENST00000614629 552 ntBASIC3.78□□□□□ -1.8
KRT40Q6A162 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
KRT40Q6A162 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
KRT40Q6A162 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.77□□□□□ -1.81
KRT40Q6A162 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
KRT40Q6A162 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
KRT40Q6A162 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.77□□□□□ -1.81
KRT40Q6A162 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.77□□□□□ -1.81
KRT40Q6A162 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
KRT40Q6A162 Y_RNA.33-201ENST00000362591 102 ntBASIC3.77□□□□□ -1.81
KRT40Q6A162 Y_RNA.193-201ENST00000363979 102 ntBASIC3.77□□□□□ -1.81
KRT40Q6A162 RNU6-505P-201ENST00000384427 107 ntBASIC3.77□□□□□ -1.81
KRT40Q6A162 SNORA41-201ENST00000384675 132 ntBASIC3.77□□□□□ -1.81
KRT40Q6A162 AL445529.1-201ENST00000398713 389 ntBASIC3.77□□□□□ -1.81
KRT40Q6A162 AL030996.1-201ENST00000411430 235 ntBASIC3.77□□□□□ -1.81
KRT40Q6A162 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.77□□□□□ -1.81
KRT40Q6A162 NDUFB4P7-201ENST00000423198 363 ntBASIC3.77□□□□□ -1.81
KRT40Q6A162 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC3.77□□□□□ -1.81
KRT40Q6A162 RPL23AP31-201ENST00000456160 467 ntBASIC3.77□□□□□ -1.81
KRT40Q6A162 AC018437.1-201ENST00000492214 406 ntBASIC3.77□□□□□ -1.81
KRT40Q6A162 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.77□□□□□ -1.81
KRT40Q6A162 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.77□□□□□ -1.81
KRT40Q6A162 MIR892C-201ENST00000516410 77 ntBASIC3.77□□□□□ -1.81
KRT40Q6A162 TRAV32-201ENST00000553993 340 ntBASIC3.77□□□□□ -1.81
KRT40Q6A162 AC008269.2-201ENST00000561915 1105 ntBASIC3.77□□□□□ -1.81
KRT40Q6A162 SNORD58B-201ENST00000607313 66 ntBASIC3.77□□□□□ -1.81
KRT40Q6A162 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.77□□□□□ -1.81
KRT40Q6A162 CDC27P3-201ENST00000635418 1910 ntBASIC3.77□□□□□ -1.81
KRT40Q6A162 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
KRT40Q6A162 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
KRT40Q6A162 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 173.7 ms