Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 RNU6-1315P-201ENST00000517187 99 ntBASIC3.83□□□□□ -1.8
KRT40Q6A162 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC3.83□□□□□ -1.8
KRT40Q6A162 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.83□□□□□ -1.8
KRT40Q6A162 MIR5680-201ENST00000577577 84 ntBASIC3.83□□□□□ -1.8
KRT40Q6A162 MIR4503-201ENST00000582187 83 ntBASIC3.83□□□□□ -1.8
KRT40Q6A162 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.83□□□□□ -1.8
KRT40Q6A162 AC005014.2-201ENST00000607795 599 ntBASIC3.83□□□□□ -1.8
KRT40Q6A162 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.83□□□□□ -1.8
KRT40Q6A162 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC3.83□□□□□ -1.8
KRT40Q6A162 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.83□□□□□ -1.8
KRT40Q6A162 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
KRT40Q6A162 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
KRT40Q6A162 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.83□□□□□ -1.8
KRT40Q6A162 AC004925.1-201ENST00000624256 2706 ntBASIC3.82□□□□□ -1.8
KRT40Q6A162 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
KRT40Q6A162 TNPO1P3-201ENST00000436471 2662 ntBASIC3.82□□□□□ -1.8
KRT40Q6A162 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.82□□□□□ -1.8
KRT40Q6A162 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.82□□□□□ -1.8
KRT40Q6A162 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC3.82□□□□□ -1.8
KRT40Q6A162 RNU1-75P-201ENST00000347264 129 ntBASIC3.82□□□□□ -1.8
KRT40Q6A162 RNA5SP126-201ENST00000365092 109 ntBASIC3.82□□□□□ -1.8
KRT40Q6A162 Y_RNA.364-201ENST00000365532 101 ntBASIC3.82□□□□□ -1.8
KRT40Q6A162 RNU6-26P-201ENST00000383985 107 ntBASIC3.82□□□□□ -1.8
KRT40Q6A162 MIR517A-201ENST00000385001 87 ntBASIC3.82□□□□□ -1.8
KRT40Q6A162 U3.19-201ENST00000390893 196 ntBASIC3.82□□□□□ -1.8
KRT40Q6A162 Y_RNA.645-201ENST00000391229 102 ntBASIC3.82□□□□□ -1.8
KRT40Q6A162 MTCYBP9-201ENST00000431021 303 ntBASIC3.82□□□□□ -1.8
KRT40Q6A162 HMGN1P18-201ENST00000457642 277 ntBASIC3.82□□□□□ -1.8
KRT40Q6A162 AC022493.2-201ENST00000506122 481 ntBASIC3.82□□□□□ -1.8
KRT40Q6A162 MLLT10P2-201ENST00000506434 249 ntBASIC3.82□□□□□ -1.8
KRT40Q6A162 AC008716.1-201ENST00000511084 513 ntBASIC3.82□□□□□ -1.8
KRT40Q6A162 RNA5SP341-201ENST00000516261 117 ntBASIC3.82□□□□□ -1.8
KRT40Q6A162 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC3.82□□□□□ -1.8
KRT40Q6A162 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.82□□□□□ -1.8
KRT40Q6A162 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.82□□□□□ -1.8
KRT40Q6A162 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC3.82□□□□□ -1.8
KRT40Q6A162 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.82□□□□□ -1.8
KRT40Q6A162 AC006157.1-201ENST00000611750 366 ntBASIC3.82□□□□□ -1.8
KRT40Q6A162 RMST_4.1-201ENST00000616886 107 ntBASIC3.82□□□□□ -1.8
KRT40Q6A162 SNORD39.4-201ENST00000620099 78 ntBASIC3.82□□□□□ -1.8
KRT40Q6A162 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.82□□□□□ -1.8
KRT40Q6A162 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
KRT40Q6A162 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
KRT40Q6A162 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
KRT40Q6A162 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.82□□□□□ -1.8
KRT40Q6A162 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
KRT40Q6A162 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
KRT40Q6A162 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
KRT40Q6A162 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
KRT40Q6A162 RNU6-490P-201ENST00000362985 107 ntBASIC3.81□□□□□ -1.8
KRT40Q6A162 RNU6-173P-201ENST00000364215 104 ntBASIC3.81□□□□□ -1.8
KRT40Q6A162 RNU6-196P-201ENST00000384315 107 ntBASIC3.81□□□□□ -1.8
KRT40Q6A162 RNU6-1179P-201ENST00000384667 107 ntBASIC3.81□□□□□ -1.8
KRT40Q6A162 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
KRT40Q6A162 HMGB3P2-201ENST00000411913 584 ntBASIC3.81□□□□□ -1.8
KRT40Q6A162 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.81□□□□□ -1.8
KRT40Q6A162 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC3.81□□□□□ -1.8
KRT40Q6A162 MRPS18CP6-201ENST00000423587 223 ntBASIC3.81□□□□□ -1.8
KRT40Q6A162 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.81□□□□□ -1.8
KRT40Q6A162 MYL8P-204ENST00000431574 518 ntBASIC3.81□□□□□ -1.8
KRT40Q6A162 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
KRT40Q6A162 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC3.81□□□□□ -1.8
KRT40Q6A162 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC3.81□□□□□ -1.8
KRT40Q6A162 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.81□□□□□ -1.8
KRT40Q6A162 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.81□□□□□ -1.8
KRT40Q6A162 Z75741.1-201ENST00000446793 314 ntBASIC3.81□□□□□ -1.8
KRT40Q6A162 AC006539.3-201ENST00000454258 129 ntBASIC3.81□□□□□ -1.8
KRT40Q6A162 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.81□□□□□ -1.8
KRT40Q6A162 CEACAMP4-201ENST00000457676 421 ntBASIC3.81□□□□□ -1.8
KRT40Q6A162 SNORA25.10-201ENST00000515926 124 ntBASIC3.81□□□□□ -1.8
KRT40Q6A162 RNU6-764P-201ENST00000516396 105 ntBASIC3.81□□□□□ -1.8
KRT40Q6A162 SCARNA15.2-201ENST00000516409 127 ntBASIC3.81□□□□□ -1.8
KRT40Q6A162 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.81□□□□□ -1.8
KRT40Q6A162 AC084851.1-201ENST00000529105 249 ntBASIC3.81□□□□□ -1.8
KRT40Q6A162 AC004024.1-201ENST00000549244 247 ntBASIC3.81□□□□□ -1.8
KRT40Q6A162 AL157871.3-201ENST00000557231 293 ntBASIC3.81□□□□□ -1.8
KRT40Q6A162 SNORD84-203ENST00000584275 78 ntBASIC3.81□□□□□ -1.8
KRT40Q6A162 uc_338.1-201ENST00000612113 180 ntBASIC3.81□□□□□ -1.8
KRT40Q6A162 AC090132.2-201ENST00000615881 347 ntBASIC3.81□□□□□ -1.8
KRT40Q6A162 AC087588.2-201ENST00000617667 426 ntBASIC3.81□□□□□ -1.8
KRT40Q6A162 AL162373.1-201ENST00000620433 407 ntBASIC3.81□□□□□ -1.8
KRT40Q6A162 AC005183.1-201ENST00000603687 1979 ntBASIC3.81□□□□□ -1.8
KRT40Q6A162 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.81□□□□□ -1.8
KRT40Q6A162 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
KRT40Q6A162 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.81□□□□□ -1.8
KRT40Q6A162 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
KRT40Q6A162 USP8P1-201ENST00000494673 3183 ntBASIC3.8□□□□□ -1.8
KRT40Q6A162 DEFB108F-201ENST00000344638 222 ntBASIC3.8□□□□□ -1.8
KRT40Q6A162 RNU6-384P-201ENST00000364900 104 ntBASIC3.8□□□□□ -1.8
KRT40Q6A162 Y_RNA.324-201ENST00000365165 102 ntBASIC3.8□□□□□ -1.8
KRT40Q6A162 RNA5SP229-201ENST00000410809 99 ntBASIC3.8□□□□□ -1.8
KRT40Q6A162 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.8□□□□□ -1.8
KRT40Q6A162 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
KRT40Q6A162 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.8□□□□□ -1.8
KRT40Q6A162 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.8□□□□□ -1.8
KRT40Q6A162 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.8□□□□□ -1.8
KRT40Q6A162 HMGB1P12-201ENST00000438594 598 ntBASIC3.8□□□□□ -1.8
KRT40Q6A162 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.8□□□□□ -1.8
KRT40Q6A162 FABP5P15-201ENST00000453566 214 ntBASIC3.8□□□□□ -1.8
KRT40Q6A162 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 182.2 ms