Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RNU6ATAC16P-201ENST00000408591 138 ntBASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 RNA5SP239-201ENST00000410218 129 ntBASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 RNU6-394P-201ENST00000410735 107 ntBASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 RPL21P90-201ENST00000415692 466 ntBASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 AC016712.1-201ENST00000431088 378 ntBASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 RPL21P41-201ENST00000459863 264 ntBASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 RNU6-313P-201ENST00000516317 112 ntBASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 RNU6-62P-201ENST00000516526 102 ntBASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 RNU6-677P-201ENST00000516914 101 ntBASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 RN7SKP60-201ENST00000516985 239 ntBASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 RNU6-1231P-201ENST00000517185 103 ntBASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 IGHVII-62-1-201ENST00000519283 235 ntBASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 AC010186.2-204ENST00000537668 439 ntBASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 SYF2P1-201ENST00000550658 413 ntBASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 TRAV32-201ENST00000553993 340 ntBASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 RN7SL600P-201ENST00000581811 299 ntBASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 AC067852.3-201ENST00000589177 561 ntBASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 AC005255.1-201ENST00000593748 216 ntBASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 AL591424.2-201ENST00000617023 128 ntBASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 PRO1804-201ENST00000623780 2050 ntBASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.53□□□□□ -1.69
CCDC39Q9UFE4 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 RNU6-595P-201ENST00000363944 107 ntBASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 Y_RNA.383-201ENST00000383855 97 ntBASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 Y_RNA.398-201ENST00000383952 99 ntBASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 RNU6-339P-201ENST00000384310 107 ntBASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 RNU6-933P-201ENST00000384424 107 ntBASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 RPS15AP6-201ENST00000420703 385 ntBASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 COX6CP14-201ENST00000469580 174 ntBASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 RN7SL860P-201ENST00000473738 223 ntBASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 VN1R105P-201ENST00000486595 910 ntBASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 SNORA31.18-201ENST00000517043 134 ntBASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 AC087369.1-201ENST00000520775 996 ntBASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 MRPL49P2-201ENST00000521066 465 ntBASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 MIR5696-201ENST00000578474 85 ntBASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 AC104465.1-201ENST00000611365 139 ntBASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 AL031601.2-202ENST00000622650 282 ntBASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 U6.106-201ENST00000636360 105 ntBASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 U6.92-201ENST00000636464 89 ntBASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 AP001486.2-201ENST00000561652 5113 ntBASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC39Q9UFE4 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 RNU6-14P-201ENST00000384630 106 ntBASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 RNU6-959P-201ENST00000384671 107 ntBASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 RNU6-1154P-201ENST00000391001 104 ntBASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 HSPE1P8-201ENST00000406997 288 ntBASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 Y_RNA.602-201ENST00000410535 92 ntBASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 RPL7AP73-201ENST00000413490 353 ntBASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 CYCSP43-201ENST00000438233 310 ntBASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 AL031659.1-201ENST00000447075 539 ntBASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 AC010618.1-201ENST00000469924 477 ntBASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 PPIAP15-201ENST00000479662 484 ntBASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 MTND3P25-201ENST00000509243 135 ntBASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 Vault.1-201ENST00000516474 102 ntBASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 SNORD39.4-201ENST00000620099 78 ntBASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 FAM91A3P-201ENST00000456826 2544 ntBASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.51□□□□□ -1.69
CCDC39Q9UFE4 DDX10P1-201ENST00000448545 1933 ntBASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 Y_RNA.240-201ENST00000364469 95 ntBASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 200.8 ms