Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 ABBA01006766.1-201ENST00000584728 294 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 AL162373.1-201ENST00000620433 407 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 RNU6-1072P-201ENST00000384703 107 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 RNU6-443P-201ENST00000384780 107 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 MIR320C1-201ENST00000408566 88 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 RPL21P24-201ENST00000413752 448 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 MTATP6P19-201ENST00000413797 659 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 AC096649.2-201ENST00000416186 393 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 RPS3AP37-201ENST00000419176 745 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 BPY2DP-201ENST00000422208 265 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 BX119904.4-201ENST00000424402 301 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 AC098934.3-201ENST00000430450 190 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 FGF7P5-201ENST00000441829 291 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 RN7SKP258-201ENST00000517151 304 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 BTF3P12-201ENST00000519620 469 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 BNIP3P27-201ENST00000599991 412 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 AC079416.3-201ENST00000624479 549 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 RNU6-289P-201ENST00000364093 107 ntBASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 Y_RNA.234-201ENST00000364409 97 ntBASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 Y_RNA.294-201ENST00000364916 102 ntBASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 RNU6-750P-201ENST00000390946 107 ntBASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 SNORA46.1-201ENST00000391069 153 ntBASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 AL109755.1-201ENST00000401791 649 ntBASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 AL513475.1-201ENST00000406602 315 ntBASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 ZNF90P2-204ENST00000419323 1075 ntBASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 USP9YP11-201ENST00000427537 717 ntBASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 ELOCP14-201ENST00000428070 331 ntBASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 AL591212.2-201ENST00000433923 257 ntBASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 ELOCP7-201ENST00000439968 331 ntBASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 RPL26P9-201ENST00000457466 433 ntBASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 AP001269.3-201ENST00000588718 329 ntBASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 AC002545.1-201ENST00000592511 181 ntBASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 AL357094.1-201ENST00000603845 844 ntBASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 AL133445.2-201ENST00000611191 527 ntBASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 uc_338.14-201ENST00000613162 166 ntBASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 AL049777.1-201ENST00000622740 518 ntBASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 U2.21-201ENST00000637295 81 ntBASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 IL33-202ENST00000417746 2327 ntTSL 2 BASIC1.56□□□□□ -2.16
SHANK3Q9BYB0 RNU6-462P-201ENST00000362659 105 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 Y_RNA.85-201ENST00000363014 111 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 RNU6-343P-201ENST00000364709 104 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 RNU6-744P-201ENST00000365557 107 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 RNU6-1316P-201ENST00000384242 108 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 RN7SKP266-201ENST00000410232 287 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 AC023141.4-201ENST00000412031 328 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 AL449283.1-202ENST00000418249 604 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 AC007098.1-201ENST00000420122 367 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 AC098831.1-201ENST00000440661 216 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 NEFMP1-201ENST00000443423 1006 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 MTATP6P7-201ENST00000453315 681 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 AC013267.1-201ENST00000458227 267 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 BZW1P2-201ENST00000473537 826 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 AC108729.1-201ENST00000487812 947 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 AC116353.3-201ENST00000511215 249 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 SNORA19.3-201ENST00000516165 130 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 RNY4P37-201ENST00000516225 96 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 RNU2-44P-201ENST00000516795 194 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 AC073413.2-201ENST00000604332 360 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 AC006270.3-201ENST00000605967 1036 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 MIR7157-201ENST00000635801 60 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 MIR7515-201ENST00000637837 67 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 AC010889.1-201ENST00000566193 2666 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 AP000648.3-201ENST00000623539 4507 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 AC110491.1-201ENST00000562191 2010 ntBASIC1.55□□□□□ -2.16
SHANK3Q9BYB0 VTRNA1-3-201ENST00000365645 89 ntBASIC1.54□□□□□ -2.16
SHANK3Q9BYB0 Y_RNA.465-201ENST00000384293 102 ntBASIC1.54□□□□□ -2.16
SHANK3Q9BYB0 RN7SKP200-201ENST00000410564 320 ntBASIC1.54□□□□□ -2.16
SHANK3Q9BYB0 MTCO1P17-201ENST00000411522 491 ntBASIC1.54□□□□□ -2.16
SHANK3Q9BYB0 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC1.54□□□□□ -2.16
SHANK3Q9BYB0 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC1.54□□□□□ -2.16
SHANK3Q9BYB0 SNRPEP9-201ENST00000436794 238 ntBASIC1.54□□□□□ -2.16
SHANK3Q9BYB0 MTCO2P20-201ENST00000437339 673 ntBASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 194.2 ms