Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MTND5P41-201ENST00000517498 206 ntBASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 IGHVII-53-1-201ENST00000519538 255 ntBASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 MIR4300-201ENST00000581016 96 ntBASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 MIR3138-201ENST00000585238 82 ntBASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 Z83818.1-201ENST00000603584 150 ntBASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 Y_RNA.76-201ENST00000362931 109 ntBASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 Y_RNA.541-201ENST00000384640 113 ntBASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 BX842559.1-201ENST00000419615 532 ntBASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 AL358472.1-201ENST00000431295 329 ntBASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 AC004866.2-201ENST00000438285 481 ntBASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 AL645939.1-201ENST00000453429 797 ntBASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 AC008481.1-201ENST00000463278 396 ntBASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 RPL21P104-201ENST00000464143 478 ntBASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 AC087190.1-201ENST00000484462 480 ntBASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 AC107032.1-201ENST00000485945 480 ntBASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 AC069113.1-201ENST00000517763 267 ntBASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 AP003730.1-201ENST00000524605 285 ntBASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 AC025627.2-201ENST00000576220 160 ntBASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 MIR4700-201ENST00000578311 74 ntBASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 MIR5701-3-201ENST00000578890 82 ntBASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 MIR5684-201ENST00000585074 65 ntBASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 MIR5701-1-201ENST00000585138 82 ntBASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 AL355812.1-201ENST00000603215 216 ntBASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 ARF4P1-201ENST00000605447 541 ntBASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 AC007619.2-201ENST00000605743 379 ntBASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 MIR5701-2-201ENST00000615634 82 ntBASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 U2.14-201ENST00000615943 113 ntBASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 AC110801.1-201ENST00000623590 212 ntBASIC4.59□□□□□ -1.67
CCDC39Q9UFE4 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 RNU6-47P-201ENST00000383866 107 ntBASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 RNU6-22P-201ENST00000384355 107 ntBASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 U3.29-201ENST00000391296 212 ntBASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 RPS29P13-201ENST00000402041 169 ntBASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 MIR1251-201ENST00000408552 70 ntBASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 RN7SKP51-201ENST00000410781 304 ntBASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 AC073063.1-201ENST00000434352 607 ntBASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 NUTF2P3-201ENST00000448540 384 ntBASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 AC091021.1-201ENST00000468051 388 ntBASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 AC010631.1-201ENST00000474150 156 ntBASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 HMGN2P13-201ENST00000476476 274 ntBASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 AC113155.1-201ENST00000511141 769 ntBASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 AC174048.1-201ENST00000603389 144 ntBASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 AL445567.2-201ENST00000618935 498 ntBASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 FP236240.3-201ENST00000623061 327 ntBASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.58□□□□□ -1.68
CCDC39Q9UFE4 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 LINC02555-201ENST00000563933 1951 ntBASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 Y_RNA.27-201ENST00000362540 103 ntBASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 Y_RNA.304-201ENST00000365011 112 ntBASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 RNU6-325P-201ENST00000411132 105 ntBASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 AL160275.3-201ENST00000423876 471 ntBASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 AC010469.2-201ENST00000496412 480 ntBASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 AC020593.1-201ENST00000507399 299 ntBASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 AC074250.1-201ENST00000511117 192 ntBASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 CPDP1-201ENST00000579660 283 ntBASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 AL121917.1-203ENST00000605534 577 ntBASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 AC008962.1-201ENST00000605729 304 ntBASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 MIR3976-201ENST00000606807 139 ntBASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 AC005344.1-201ENST00000613391 459 ntBASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 MIR7151-201ENST00000617477 60 ntBASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 167.5 ms