Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RNU6-113P-201ENST00000516653 101 ntBASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 AC090897.2-201ENST00000581715 130 ntBASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 VN1R83P-201ENST00000595685 445 ntBASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 AL355877.2-201ENST00000603670 358 ntBASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 MTND4LP5-201ENST00000605152 292 ntBASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 UBE2Q2P6-201ENST00000612666 153 ntBASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 AL121895.2-201ENST00000619558 447 ntBASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 MTND4P27-201ENST00000450813 1354 ntBASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 RNU5E-10P-201ENST00000363506 118 ntBASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 AL953862.1-201ENST00000423016 168 ntBASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 AL512844.2-201ENST00000433990 593 ntBASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 RPL7P18-201ENST00000478965 734 ntBASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 FO393415.2-201ENST00000480085 343 ntBASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 RNU5F-8P-201ENST00000515941 111 ntBASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 RNU6-928P-201ENST00000516876 104 ntBASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 AC091163.3-201ENST00000518269 1144 ntBASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 MIR5571-201ENST00000577998 113 ntBASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 HMGN2P15-201ENST00000585707 270 ntBASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 AL592221.1-201ENST00000605266 382 ntBASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 AC007349.4-201ENST00000608114 532 ntBASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 AC092574.1-201ENST00000609771 420 ntBASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 AC008498.1-201ENST00000613012 531 ntBASIC1.6□□□□□ -2.15
SHANK3Q9BYB0 AC099786.3-201ENST00000565735 1410 ntBASIC1.59□□□□□ -2.15
SHANK3Q9BYB0 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC1.59□□□□□ -2.15
SHANK3Q9BYB0 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
SHANK3Q9BYB0 RNU6-413P-201ENST00000384115 107 ntBASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 Y_RNA.472-201ENST00000384322 102 ntBASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 MIR17-201ENST00000385012 84 ntBASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 U3.20-201ENST00000390909 217 ntBASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 RNU6-278P-201ENST00000390945 109 ntBASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 HMGB1P49-201ENST00000418882 569 ntBASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 AC083875.1-201ENST00000419509 405 ntBASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 HMGB1P9-201ENST00000429856 646 ntBASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 AC009296.1-201ENST00000443146 155 ntBASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 AC104563.1-201ENST00000476147 376 ntBASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 MRPS36P2-201ENST00000512569 299 ntBASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 SCARNA3-201ENST00000517097 143 ntBASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 RNU6-840P-201ENST00000517275 65 ntBASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 BNIP3P31-201ENST00000604515 566 ntBASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 AC018645.2-201ENST00000609151 472 ntBASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 SDR42E1P2-201ENST00000614861 481 ntBASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 AC009090.3-201ENST00000616553 565 ntBASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 AL603758.1-201ENST00000618654 241 ntBASIC1.59□□□□□ -2.16
SHANK3Q9BYB0 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
SHANK3Q9BYB0 ZBTB8OSP1-201ENST00000342688 498 ntBASIC1.58□□□□□ -2.16
SHANK3Q9BYB0 MIR373-201ENST00000362273 69 ntBASIC1.58□□□□□ -2.16
SHANK3Q9BYB0 RNU4-91P-201ENST00000364778 135 ntBASIC1.58□□□□□ -2.16
SHANK3Q9BYB0 NDUFS5P4-201ENST00000412983 318 ntBASIC1.58□□□□□ -2.16
SHANK3Q9BYB0 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.58□□□□□ -2.16
SHANK3Q9BYB0 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC1.58□□□□□ -2.16
SHANK3Q9BYB0 PSPHP1-201ENST00000450062 261 ntBASIC1.58□□□□□ -2.16
SHANK3Q9BYB0 AL049874.1-201ENST00000489560 388 ntBASIC1.58□□□□□ -2.16
SHANK3Q9BYB0 SCARNA11.3-201ENST00000517276 130 ntBASIC1.58□□□□□ -2.16
SHANK3Q9BYB0 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.58□□□□□ -2.16
SHANK3Q9BYB0 AC023824.2-201ENST00000566185 400 ntBASIC1.58□□□□□ -2.16
SHANK3Q9BYB0 MIR3117-201ENST00000584034 78 ntBASIC1.58□□□□□ -2.16
SHANK3Q9BYB0 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC1.58□□□□□ -2.16
SHANK3Q9BYB0 AL109933.3-201ENST00000619095 188 ntBASIC1.58□□□□□ -2.16
SHANK3Q9BYB0 AC010329.5-201ENST00000623497 2174 ntBASIC1.58□□□□□ -2.16
SHANK3Q9BYB0 Y_RNA.245-201ENST00000364493 95 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 RNU6-716P-201ENST00000365621 103 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 RNU2-33P-201ENST00000410344 192 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 USP9YP33-201ENST00000412220 421 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 MTATP6P20-201ENST00000414147 562 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 USP9YP35-201ENST00000435696 412 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 MTCO3P45-201ENST00000443036 613 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 ELOCP30-201ENST00000447108 299 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 RPS15AP34-201ENST00000487776 387 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 AC105252.1-201ENST00000503089 286 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 RNA5SP290-201ENST00000517133 127 ntBASIC1.57□□□□□ -2.16
SHANK3Q9BYB0 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 192.8 ms