Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC006463.2-201ENST00000473326 348 ntBASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 ACA59.1-201ENST00000515966 143 ntBASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 Y_RNA.689-201ENST00000516589 107 ntBASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 RNU7-143P-201ENST00000516781 65 ntBASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 RNU4ATAC10P-201ENST00000516967 122 ntBASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 RNU4-60P-201ENST00000517239 135 ntBASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 AL160281.1-201ENST00000605307 311 ntBASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 AC073657.2-201ENST00000605661 303 ntBASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 SNHG22-203ENST00000617833 660 ntBASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 AC006065.5-201ENST00000623427 349 ntBASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 Y_RNA.458-201ENST00000384240 102 ntBASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 SNORD73A-201ENST00000386062 65 ntBASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 MT-TC-201ENST00000387405 66 ntBASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 AC016769.2-201ENST00000414815 475 ntBASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 RPL18P10-201ENST00000425606 538 ntBASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 S100A11P1-201ENST00000477525 312 ntBASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 AC105137.1-201ENST00000484355 562 ntBASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 AL359273.1-201ENST00000510918 627 ntBASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 AC026726.1-201ENST00000512859 601 ntBASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 RAB9BP1-201ENST00000519581 626 ntBASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 ERHP1-201ENST00000523006 310 ntBASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 MRPS36P4-201ENST00000534436 298 ntBASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 AL158827.2-201ENST00000602494 330 ntBASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 AC025588.3-201ENST00000604182 274 ntBASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 MIR376A1-201ENST00000616574 68 ntBASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 MIR8059-201ENST00000620427 81 ntBASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 AL365265.1-201ENST00000621045 234 ntBASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 AL161637.1-201ENST00000622380 412 ntBASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 AL691447.3-201ENST00000635020 330 ntBASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.62□□□□□ -1.67
CCDC39Q9UFE4 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 SNORA60-201ENST00000362396 134 ntBASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 SNORD35B-201ENST00000363660 87 ntBASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 Y_RNA.480-201ENST00000384364 102 ntBASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 MIR1183-201ENST00000408856 89 ntBASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 Y_RNA.592-201ENST00000410274 109 ntBASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 FAR2P2-201ENST00000413041 594 ntBASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 AC092809.3-201ENST00000415453 231 ntBASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 Z95327.1-201ENST00000446082 482 ntBASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 AL513124.1-201ENST00000450410 614 ntBASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 AC022034.3-201ENST00000471393 478 ntBASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 RN7SL481P-201ENST00000477764 299 ntBASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 RN7SL271P-201ENST00000487601 295 ntBASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 SCARNA24.2-201ENST00000516968 130 ntBASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 IGKV2D-36-201ENST00000518643 226 ntBASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 AC136932.1-201ENST00000574771 208 ntBASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 AC244505.7-201ENST00000599675 272 ntBASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 RNU6-85P-201ENST00000605989 107 ntBASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 uc_338.32-201ENST00000615087 172 ntBASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 AC007998.5-201ENST00000622938 237 ntBASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 AC026951.1-201ENST00000559530 2459 ntBASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 RLIMP1-201ENST00000339626 1680 ntBASIC4.61□□□□□ -1.67
CCDC39Q9UFE4 AL133412.1-201ENST00000380194 2992 ntBASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 Z75746.1-201ENST00000440243 2080 ntBASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 UBE3AP2-201ENST00000429033 2259 ntBASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 RNU6-858P-201ENST00000362436 107 ntBASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 RNU6-637P-201ENST00000384050 107 ntBASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 Y_RNA.533-201ENST00000384596 114 ntBASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 AC007098.1-201ENST00000420122 367 ntBASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 AC006946.1-201ENST00000429106 328 ntBASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 AC091286.1-201ENST00000431233 461 ntBASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 AC008264.1-201ENST00000447612 367 ntBASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 AC109925.1-201ENST00000478069 331 ntBASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 RPL31P60-201ENST00000478450 367 ntBASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 RN7SL604P-201ENST00000492589 296 ntBASIC4.6□□□□□ -1.67
CCDC39Q9UFE4 RPS27AP13-201ENST00000498403 237 ntBASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 160.5 ms