Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 RNU6-1280P-201ENST00000365211 107 ntBASIC2.65□□□□□ -1.99
CCDC43Q96MW1 RNU6-898P-201ENST00000365627 104 ntBASIC2.65□□□□□ -1.99
CCDC43Q96MW1 RNU6-946P-201ENST00000383878 107 ntBASIC2.65□□□□□ -1.99
CCDC43Q96MW1 RNU1-52P-201ENST00000384190 164 ntBASIC2.65□□□□□ -1.99
CCDC43Q96MW1 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC43Q96MW1 CYCSP48-201ENST00000417124 323 ntBASIC2.65□□□□□ -1.99
CCDC43Q96MW1 AC011233.1-201ENST00000422812 283 ntBASIC2.65□□□□□ -1.99
CCDC43Q96MW1 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.65□□□□□ -1.99
CCDC43Q96MW1 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC43Q96MW1 AL008629.1-201ENST00000438615 184 ntBASIC2.65□□□□□ -1.99
CCDC43Q96MW1 HIGD1AP2-201ENST00000446367 280 ntBASIC2.65□□□□□ -1.99
CCDC43Q96MW1 AL590365.1-201ENST00000450788 243 ntBASIC2.65□□□□□ -1.99
CCDC43Q96MW1 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC43Q96MW1 LAMTOR3P2-201ENST00000504479 232 ntBASIC2.65□□□□□ -1.99
CCDC43Q96MW1 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.65□□□□□ -1.99
CCDC43Q96MW1 AC116655.1-201ENST00000508324 901 ntBASIC2.65□□□□□ -1.99
CCDC43Q96MW1 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.65□□□□□ -1.99
CCDC43Q96MW1 HMGB3P3-201ENST00000510526 400 ntBASIC2.65□□□□□ -1.99
CCDC43Q96MW1 AC008413.1-201ENST00000511864 177 ntBASIC2.65□□□□□ -1.99
CCDC43Q96MW1 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.65□□□□□ -1.99
CCDC43Q96MW1 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC43Q96MW1 AC012435.1-202ENST00000568772 240 ntBASIC2.65□□□□□ -1.99
CCDC43Q96MW1 AC103810.6-201ENST00000606708 136 ntBASIC2.65□□□□□ -1.99
CCDC43Q96MW1 MIR6134-201ENST00000617606 109 ntBASIC2.65□□□□□ -1.99
CCDC43Q96MW1 CU459211.1-201ENST00000635667 749 ntBASIC2.65□□□□□ -1.99
CCDC43Q96MW1 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.65□□□□□ -1.99
CCDC43Q96MW1 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
CCDC43Q96MW1 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.65□□□□□ -1.99
CCDC43Q96MW1 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
CCDC43Q96MW1 AC080100.1-201ENST00000624239 5356 ntBASIC2.64□□□□□ -1.99
CCDC43Q96MW1 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
CCDC43Q96MW1 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.64□□□□□ -1.99
CCDC43Q96MW1 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
CCDC43Q96MW1 RNU1-91P-201ENST00000364746 163 ntBASIC2.64□□□□□ -1.99
CCDC43Q96MW1 SNORD115.1-201ENST00000391109 76 ntBASIC2.64□□□□□ -1.99
CCDC43Q96MW1 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.64□□□□□ -1.99
CCDC43Q96MW1 AC009963.1-201ENST00000417265 157 ntBASIC2.64□□□□□ -1.99
CCDC43Q96MW1 AC007560.1-201ENST00000426912 237 ntBASIC2.64□□□□□ -1.99
CCDC43Q96MW1 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC2.64□□□□□ -1.99
CCDC43Q96MW1 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.64□□□□□ -1.99
CCDC43Q96MW1 SNORA31.19-201ENST00000517079 126 ntBASIC2.64□□□□□ -1.99
CCDC43Q96MW1 AC011979.2-201ENST00000527568 352 ntBASIC2.64□□□□□ -1.99
CCDC43Q96MW1 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.64□□□□□ -1.99
CCDC43Q96MW1 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC2.64□□□□□ -1.99
CCDC43Q96MW1 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
CCDC43Q96MW1 AC069528.2-201ENST00000624849 1991 ntBASIC2.63□□□□□ -1.99
CCDC43Q96MW1 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.63□□□□□ -1.99
CCDC43Q96MW1 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
CCDC43Q96MW1 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
CCDC43Q96MW1 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.63□□□□□ -1.99
CCDC43Q96MW1 AL445529.1-201ENST00000398713 389 ntBASIC2.63□□□□□ -1.99
CCDC43Q96MW1 U6atac.2-201ENST00000408644 118 ntBASIC2.63□□□□□ -1.99
CCDC43Q96MW1 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC43Q96MW1 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC2.63□□□□□ -1.99
CCDC43Q96MW1 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC43Q96MW1 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.63□□□□□ -1.99
CCDC43Q96MW1 AL591704.1-201ENST00000432574 275 ntBASIC2.63□□□□□ -1.99
CCDC43Q96MW1 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC43Q96MW1 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC43Q96MW1 AC009961.3-201ENST00000449832 765 ntBASIC2.63□□□□□ -1.99
CCDC43Q96MW1 MTND1P12-201ENST00000455231 147 ntBASIC2.63□□□□□ -1.99
CCDC43Q96MW1 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC43Q96MW1 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC2.63□□□□□ -1.99
CCDC43Q96MW1 AC080013.2-201ENST00000460866 323 ntBASIC2.63□□□□□ -1.99
CCDC43Q96MW1 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC43Q96MW1 RPL37P25-201ENST00000507308 276 ntBASIC2.63□□□□□ -1.99
CCDC43Q96MW1 SNORA25.11-201ENST00000515935 105 ntBASIC2.63□□□□□ -1.99
CCDC43Q96MW1 Y_RNA.689-201ENST00000516589 107 ntBASIC2.63□□□□□ -1.99
CCDC43Q96MW1 AP003181.2-201ENST00000528941 181 ntBASIC2.63□□□□□ -1.99
CCDC43Q96MW1 MIR5697-201ENST00000578045 78 ntBASIC2.63□□□□□ -1.99
CCDC43Q96MW1 AC105245.1-201ENST00000581934 244 ntBASIC2.63□□□□□ -1.99
CCDC43Q96MW1 AL645944.1-201ENST00000603857 493 ntBASIC2.63□□□□□ -1.99
CCDC43Q96MW1 AC034229.4-201ENST00000607861 441 ntBASIC2.63□□□□□ -1.99
CCDC43Q96MW1 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.63□□□□□ -1.99
CCDC43Q96MW1 AC027807.2-201ENST00000616099 408 ntBASIC2.63□□□□□ -1.99
CCDC43Q96MW1 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
CCDC43Q96MW1 AC025048.6-202ENST00000627667 438 ntBASIC2.63□□□□□ -1.99
CCDC43Q96MW1 CDC27P3-201ENST00000635418 1910 ntBASIC2.63□□□□□ -1.99
CCDC43Q96MW1 TEX21P-201ENST00000447107 1476 ntBASIC2.63□□□□□ -1.99
CCDC43Q96MW1 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
CCDC43Q96MW1 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.63□□□□□ -1.99
CCDC43Q96MW1 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC43Q96MW1 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC43Q96MW1 RNA5SP289-201ENST00000362332 137 ntBASIC2.62□□□□□ -1.99
CCDC43Q96MW1 RNU6-486P-201ENST00000363116 107 ntBASIC2.62□□□□□ -1.99
CCDC43Q96MW1 SNORA67.1-201ENST00000364749 141 ntBASIC2.62□□□□□ -1.99
CCDC43Q96MW1 HIGD1AP15-201ENST00000416198 280 ntBASIC2.62□□□□□ -1.99
CCDC43Q96MW1 XKRYP1-201ENST00000423438 492 ntBASIC2.62□□□□□ -1.99
CCDC43Q96MW1 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC43Q96MW1 XKRYP2-201ENST00000432915 492 ntBASIC2.62□□□□□ -1.99
CCDC43Q96MW1 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC2.62□□□□□ -1.99
CCDC43Q96MW1 MTND5P2-201ENST00000442927 1142 ntBASIC2.62□□□□□ -1.99
CCDC43Q96MW1 AL591719.1-201ENST00000444669 744 ntBASIC2.62□□□□□ -1.99
CCDC43Q96MW1 AL441985.1-201ENST00000457727 251 ntBASIC2.62□□□□□ -1.99
CCDC43Q96MW1 AC011005.2-201ENST00000487324 359 ntBASIC2.62□□□□□ -1.99
CCDC43Q96MW1 FAM92A1P2-202ENST00000504766 877 ntBASIC2.62□□□□□ -1.99
CCDC43Q96MW1 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC2.62□□□□□ -1.99
CCDC43Q96MW1 AC109927.2-201ENST00000506416 303 ntBASIC2.62□□□□□ -1.99
CCDC43Q96MW1 RNA5SP112-201ENST00000515937 99 ntBASIC2.62□□□□□ -1.99
CCDC43Q96MW1 SNORA31.11-201ENST00000516528 139 ntBASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 284.1 ms