Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 PABPC1P3-201ENST00000469174 459 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 RPS23P3-201ENST00000470993 430 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 MTCO2P9-201ENST00000503214 694 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC2□□□□□ -2.09
SHANK3Q9BYB0 AC087272.1-201ENST00000523624 533 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC2□□□□□ -2.09
SHANK3Q9BYB0 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC2□□□□□ -2.09
SHANK3Q9BYB0 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC2□□□□□ -2.09
SHANK3Q9BYB0 RN7SL793P-201ENST00000583259 296 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC2□□□□□ -2.09
SHANK3Q9BYB0 AC078880.5-201ENST00000617845 421 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 AC009318.4-201ENST00000620496 486 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 BX649567.1-201ENST00000642071 1134 ntBASIC2□□□□□ -2.09
SHANK3Q9BYB0 SLC10A5P1-201ENST00000379063 1306 ntBASIC1.99□□□□□ -2.09
SHANK3Q9BYB0 RNU6-353P-201ENST00000364266 108 ntBASIC1.99□□□□□ -2.09
SHANK3Q9BYB0 SNORD116-23-201ENST00000384645 92 ntBASIC1.99□□□□□ -2.09
SHANK3Q9BYB0 FCF1P2-201ENST00000415284 583 ntBASIC1.99□□□□□ -2.09
SHANK3Q9BYB0 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC1.99□□□□□ -2.09
SHANK3Q9BYB0 AL022400.1-201ENST00000423946 935 ntBASIC1.99□□□□□ -2.09
SHANK3Q9BYB0 RABEPKP1-201ENST00000440529 1026 ntBASIC1.99□□□□□ -2.09
SHANK3Q9BYB0 MTCO1P48-201ENST00000448024 1096 ntBASIC1.99□□□□□ -2.09
SHANK3Q9BYB0 RNU7-140P-201ENST00000459546 60 ntBASIC1.99□□□□□ -2.09
SHANK3Q9BYB0 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC1.99□□□□□ -2.09
SHANK3Q9BYB0 AL136520.1-202ENST00000555494 763 ntBASIC1.99□□□□□ -2.09
SHANK3Q9BYB0 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.99□□□□□ -2.09
SHANK3Q9BYB0 SULT1C2P1-202ENST00000562418 459 ntBASIC1.99□□□□□ -2.09
SHANK3Q9BYB0 FAM106DP-201ENST00000586416 501 ntBASIC1.99□□□□□ -2.09
SHANK3Q9BYB0 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC1.99□□□□□ -2.09
SHANK3Q9BYB0 AC109454.4-201ENST00000623411 649 ntBASIC1.99□□□□□ -2.09
SHANK3Q9BYB0 AC095031.1-201ENST00000623685 672 ntBASIC1.99□□□□□ -2.09
SHANK3Q9BYB0 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC1.99□□□□□ -2.09
SHANK3Q9BYB0 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
SHANK3Q9BYB0 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
SHANK3Q9BYB0 RNU6-236P-201ENST00000363886 106 ntBASIC1.98□□□□□ -2.09
SHANK3Q9BYB0 Y_RNA.458-201ENST00000384240 102 ntBASIC1.98□□□□□ -2.09
SHANK3Q9BYB0 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC1.98□□□□□ -2.09
SHANK3Q9BYB0 UBBP3-201ENST00000445497 241 ntBASIC1.98□□□□□ -2.09
SHANK3Q9BYB0 XACT-201ENST00000468762 497 ntTSL 5 BASIC1.98□□□□□ -2.09
SHANK3Q9BYB0 AC013828.1-201ENST00000481845 158 ntBASIC1.98□□□□□ -2.09
SHANK3Q9BYB0 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC1.98□□□□□ -2.09
SHANK3Q9BYB0 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC1.98□□□□□ -2.09
SHANK3Q9BYB0 RNA5SP436-201ENST00000516020 115 ntBASIC1.98□□□□□ -2.09
SHANK3Q9BYB0 AC087854.1-201ENST00000519706 414 ntBASIC1.98□□□□□ -2.09
SHANK3Q9BYB0 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC1.98□□□□□ -2.09
SHANK3Q9BYB0 TRAV28-201ENST00000557548 323 ntBASIC1.98□□□□□ -2.09
SHANK3Q9BYB0 OR4K8P-201ENST00000578842 1048 ntBASIC1.98□□□□□ -2.09
SHANK3Q9BYB0 MIR98-201ENST00000606724 119 ntBASIC1.98□□□□□ -2.09
SHANK3Q9BYB0 AL157770.1-201ENST00000623049 439 ntBASIC1.98□□□□□ -2.09
SHANK3Q9BYB0 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.98□□□□□ -2.09
SHANK3Q9BYB0 NUP58P1-201ENST00000502546 1738 ntBASIC1.98□□□□□ -2.09
SHANK3Q9BYB0 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
SHANK3Q9BYB0 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 HMGB1P5-201ENST00000255320 642 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 SNORD82-201ENST00000365530 70 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 MIR144-201ENST00000384886 86 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 ZNF736P7Y-201ENST00000425158 820 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 AC093510.2-201ENST00000562820 896 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 AL031274.2-201ENST00000599419 203 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 DUXAP4-201ENST00000603046 613 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 AC098483.2-201ENST00000603158 454 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 AC080078.3-201ENST00000605407 463 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 AL390240.1-201ENST00000612950 384 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 AC008759.3-201ENST00000613300 508 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 DUXAP9-208ENST00000622815 614 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 RNU6-989P-201ENST00000362756 107 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 RNU6-492P-201ENST00000363035 104 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 RNU6-1074P-201ENST00000383995 104 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 SNORD51-201ENST00000384320 80 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 SNORA1.3-201ENST00000384676 136 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 RNA5SP38-201ENST00000410750 119 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 RNU2-72P-201ENST00000411175 163 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 BEND7P1-201ENST00000422058 457 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 MTATP6P4-201ENST00000427725 675 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 AC090096.1-201ENST00000489168 390 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 AC096751.1-202ENST00000502691 1067 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 RNU6-1095P-201ENST00000516148 108 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 RPPH1-2P-201ENST00000516688 293 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 OR10V3P-201ENST00000525712 725 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 MIR3935-201ENST00000583472 104 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 AL158801.5-201ENST00000623123 465 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 AC091895.1-201ENST00000624494 256 ntBASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC1.97□□□□□ -2.09
SHANK3Q9BYB0 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
SHANK3Q9BYB0 U8.1-201ENST00000362843 134 ntBASIC1.96□□□□□ -2.1
SHANK3Q9BYB0 RNU6-207P-201ENST00000384137 107 ntBASIC1.96□□□□□ -2.1
SHANK3Q9BYB0 AL355615.1-201ENST00000406187 641 ntBASIC1.96□□□□□ -2.1
SHANK3Q9BYB0 AL133264.1-201ENST00000407157 562 ntBASIC1.96□□□□□ -2.1
SHANK3Q9BYB0 RNU6-1077P-201ENST00000410506 102 ntBASIC1.96□□□□□ -2.1
SHANK3Q9BYB0 AC234781.2-201ENST00000426370 994 ntBASIC1.96□□□□□ -2.1
SHANK3Q9BYB0 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
SHANK3Q9BYB0 AL645638.1-201ENST00000440519 361 ntBASIC1.96□□□□□ -2.1
SHANK3Q9BYB0 AL583843.1-201ENST00000456070 346 ntBASIC1.96□□□□□ -2.1
SHANK3Q9BYB0 AP003168.1-201ENST00000530091 307 ntBASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 158.2 ms