Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC104260.2-201ENST00000623551 3497 ntBASIC5.86□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC5.86□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RNU4-42P-201ENST00000364738 142 ntBASIC5.86□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RNU5E-6P-201ENST00000365574 115 ntBASIC5.86□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 Y_RNA.577-201ENST00000384794 101 ntBASIC5.86□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 Z98745.1-201ENST00000402553 494 ntBASIC5.86□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RNU7-167P-201ENST00000459160 62 ntBASIC5.86□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AL049873.1-201ENST00000480540 376 ntBASIC5.86□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC5.86□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC5.86□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC009570.1-201ENST00000609599 745 ntBASIC5.86□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 MIR6875-201ENST00000617506 72 ntBASIC5.86□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC000123.2-201ENST00000623124 461 ntBASIC5.86□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 ZNF962P-201ENST00000443465 3140 ntBASIC5.86□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.86□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 SUPT16HP1-201ENST00000537175 3133 ntBASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RNA5SP513-201ENST00000364648 118 ntBASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 SNORD70.1-201ENST00000391007 85 ntBASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 Y_RNA.793-201ENST00000411222 111 ntBASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RPS29P17-201ENST00000430795 166 ntBASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RPL21P112-201ENST00000434403 463 ntBASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RPL23AP52-201ENST00000439311 478 ntBASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 CHEK2P4-201ENST00000450340 246 ntBASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RPL17P19-201ENST00000489069 552 ntBASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC108471.1-201ENST00000513977 287 ntBASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RNU6-897P-201ENST00000517135 105 ntBASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC090517.1-201ENST00000569307 266 ntBASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC006600.1-201ENST00000572529 153 ntBASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RNU6-84P-201ENST00000607737 102 ntBASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC099669.2-201ENST00000616549 437 ntBASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC009229.4-201ENST00000623854 1947 ntBASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 DHX9P1-201ENST00000436565 3076 ntBASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 BBX-203ENST00000402543 3980 ntTSL 5 BASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RNU6-1059P-201ENST00000363752 98 ntBASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RNU6-214P-201ENST00000384130 107 ntBASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 SNORA51.11-201ENST00000384442 131 ntBASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RNU6-225P-201ENST00000384613 103 ntBASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 SNORD58.1-201ENST00000391313 66 ntBASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 MIR1911-201ENST00000410783 80 ntBASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RPL21P109-201ENST00000422213 475 ntBASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AL133396.1-201ENST00000432048 687 ntBASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AP001992.1-205ENST00000462248 379 ntBASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AL139099.1-201ENST00000497398 403 ntBASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC108078.2-201ENST00000510750 236 ntBASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 SNORA31.6-201ENST00000516241 130 ntBASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 RNU7-4P-201ENST00000516961 62 ntBASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AC115085.1-201ENST00000588924 229 ntBASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 AP005019.3-201ENST00000620418 560 ntBASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
SENP3-EIF4A1A0A087X0R7 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 EOGT-210ENST00000615922 1931 ntBASIC5.84□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 Z95327.2-201ENST00000414579 1873 ntBASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 MIR335-201ENST00000362173 94 ntBASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 Y_RNA.200-201ENST00000364018 102 ntBASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RNU6-960P-201ENST00000364056 120 ntBASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RNU6-842P-201ENST00000384269 107 ntBASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 182.3 ms